Strain identifier

BacDive ID: 141124

Type strain: Yes

Species: Mesorhizobium newzealandense

NCBI tax ID(s): 1300302 (species)

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General

@ref: 44033

BacDive-ID: 141124

keywords: 16S sequence, Bacteria, Gram-negative, rod-shaped, colony-forming

description: Mesorhizobium newzealandense ICMP 19545 is a Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from root nodules of Sophora prostrata from an alluvial limestone river terrace.

NCBI tax id

  • NCBI tax id: 1300302
  • Matching level: species

doi: 10.13145/bacdive141124.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium newzealandense
  • full scientific name: Mesorhizobium newzealandense De Meyer et al. 2016

@ref: 44033

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium newzealandense

type strain: yes

Morphology

cell morphology

  • @ref: 44033
  • gram stain: negative
  • cell length: 1.5-2.5 µm
  • cell width: 0.6-0.7 µm
  • cell shape: rod-shaped

colony morphology

  • @ref: 44033
  • colony size: 0.2-0.7 mm
  • colony color: white
  • colony shape: circular
  • medium used: YMA

Culture and growth conditions

culture medium

@refnamegrowth
44033YMAyes
44033YMByes

culture temp

@refgrowthtypetemperaturerange
44033positivegrowth15-30
44033nogrowth4psychrophilic
44033nogrowth7psychrophilic
44033nogrowth37mesophilic
44033positivegrowth28mesophilic

culture pH

  • @ref: 44033
  • ability: positive
  • type: growth
  • pH: 4.0-9.0
  • PH range: alkaliphile

Physiology and metabolism

halophily

  • @ref: 44033
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 1-8 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
44033167632-oxobutanoate-respiration
44033370543-hydroxybutyrate-respiration
44033645522-hydroxybutyrate-respiration
4403318024D-galacturonic acid-respiration
4403316523D-serine-respiration
4403316537galactarate-respiration
440335291gelatin-respiration
4403332735guanidinium chloride-respiration
4403317596inosine-respiration
4403317464L-galactonic acid gamma-lactone-respiration
4403318183L-pyroglutamic acid-respiration
4403351850methyl pyruvate-respiration
4403335418n-acetylneuraminate-respiration
4403375273niaproof-respiration
44033309162-oxoglutarate-respiration
4403375229sodium bromate-respiration
4403317164stachyose-respiration
4403317634D-glucose+assimilation
4403317306maltose+assimilation
4403316899D-mannitol+assimilation
4403316024D-mannose+assimilation
4403330849L-arabinose+assimilation
4403325115malate+assimilation
440331 % sodium lactate+respiration
4403316865gamma-aminobutyric acid+respiration
4403330089acetate+respiration
4403313705acetoacetate+respiration
4403317925alpha-D-glucose+respiration
4403336219alpha-lactose+respiration
44033161680aztreonam+respiration
4403318333D-arabitol+respiration
4403317057cellobiose+respiration
4403315824D-fructose+respiration
4403328847D-fucose+respiration
4403312936D-galactose+respiration
4403317306maltose+respiration
4403316899D-mannitol+respiration
4403316024D-mannose+respiration
4403328053melibiose+respiration
4403317924D-sorbitol+respiration
4403316551D-trehalose+respiration
4403332528turanose+respiration
4403328066gentiobiose+respiration
4403317754glycerol+respiration
4403316977L-alanine+respiration
4403316467L-arginine+respiration
4403329991L-aspartate+respiration
4403318287L-fucose+respiration
4403315589L-malate+respiration
4403362345L-rhamnose+respiration
4403324996lactate+respiration
440336472lincomycin+respiration
4403317268myo-inositol+respiration
4403328037N-acetylgalactosamine+respiration
44033506227N-acetylglucosamine+respiration
44033100147nalidixic acid+respiration
4403317272propionate+respiration
4403329673rifamycin sv+respiration
4403317992sucrose+respiration
4403345735troleandomycin+respiration
4403328001vancomycin+respiration
44033739183-O-methyl-D-glucose+/-respiration
44033181014-hydroxyphenylacetic acid+/-respiration
4403373706bromosuccinate+/-respiration
4403316947citrate+/-respiration
4403329990D-aspartate+/-respiration
4403378697D-fructose 6-phosphate+/-respiration
440338391D-gluconate+/-respiration
4403314314D-glucose 6-phosphate+/-respiration
4403315748D-glucuronate+/-respiration
4403315588D-malate+/-respiration
4403316634raffinose+/-respiration
4403333801D-saccharate+/-respiration
4403323652dextrin+/-respiration
4403315740formate+/-respiration
4403371321fusidate+/-respiration
4403332323glucuronamide+/-respiration
4403370744glycine-proline+/-respiration
4403329985L-glutamate+/-respiration
4403315971L-histidine+/-respiration
4403317115L-serine+/-respiration
4403348607lithium chloride+/-respiration
4403374611methyl (R)-lactate+/-respiration
4403337657methyl D-glucoside+/-respiration
4403350694minocycline+/-respiration
4403363154N-acetyl-beta-D-mannosamine+/-respiration
4403317309pectin+/-respiration
4403375248potassium tellurite+/-respiration
4403326490quinate+/-respiration
4403317814salicin+/-respiration
4403364103sodium butyrate+/-respiration
4403375198tetrazolium blue+/-respiration
4403375193tetrazolium violet+/-respiration
4403353423tween 40+/-respiration

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4403317698chloramphenicolyesyes30 µg (disc)
4403317833gentamicinyesyes10 µg (disc)
4403317076streptomycinyesyes25 µg (disc)
4403328971ampicillinyesyes10 µg (disc)
4403348923erythromycinyesyes15 µg (disc)
440336104kanamycinyesyes30 µg (disc)

enzymes

@refvalueactivityec
44033catalase-1.11.1.6
44033cytochrome oxidase+1.9.3.1
44033arginine dihydrolase+3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    4403311-methyl-C18:1ω7c14.2
    44033C16:022.1
    44033C18:1ω7c42.5
    44033C19:0cycloω8c21.2
  • type of FA analysis: whole cell analysis
  • incubation medium: YMA
  • incubation temperature: 28
  • incubation time: 1
  • library/peak naming table: TSBA 5.0
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

  • @ref: 44033
  • sample type: root nodules of Sophora prostrata from an alluvial limestone river terrace
  • geographic location: Waima/Ure River, Marlborough
  • country: New Zealand
  • origin.country: NZL
  • continent: Australia and Oceania

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Root nodule

taxonmaps

  • @ref: 69479
  • File name: preview.99_809.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_643;99_809&stattab=map
  • Last taxonomy: Mesorhizobium
  • 16S sequence: KC237410
  • Sequence Identity:
  • Total samples: 30688
  • soil counts: 18576
  • aquatic counts: 5652
  • animal counts: 4689
  • plant counts: 1771

Sequence information

16S sequences

  • @ref: 44033
  • description: 16S rRNA gene sequence
  • accession: KC237410
  • database: nuccore

GC content

  • @ref: 44033
  • GC-content: 62.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 44033

culture collection no.: ICMP 19545, LMG 28226, HAMBI 3607

straininfo link

  • @ref: 96864
  • straininfo: 393613

literature

  • topic: Phylogeny
  • Pubmed-ID: 26610329
  • title: Mesorhizobium calcicola sp. nov., Mesorhizobium waitakense sp. nov., Mesorhizobium sophorae sp. nov., Mesorhizobium newzealandense sp. nov. and Mesorhizobium kowhaii sp. nov. isolated from Sophora root nodules.
  • authors: De Meyer SE, Tan HW, Andrews M, Heenan PB, Willems A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000796
  • year: 2015

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44033Soe E. De Meyer, Heng Wee Tan, Mitchell Andrews, Peter B. Heenan and Anne WillemsMesorhizobium calcicola sp. nov., Mesorhizobium waitakense sp. nov., Mesorhizobium sophorae sp. nov., Mesorhizobium newzealandense sp. nov. and Mesorhizobium kowhaii sp. nov. isolated from Sophora root nodules10.1099/ijsem.0.000796IJSEM 66: 786-795 201626610329
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96864Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID393613.1