Strain identifier

BacDive ID: 141109

Type strain: Yes

Species: Streptomyces odonnellii

Strain Designation: 594

Strain history: <- R. Fonseca de Souza,Brasil; 594 <- A. A. Linhares

NCBI tax ID(s): 1417980 (species)

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General

@ref: 64882

BacDive-ID: 141109

DSM-Number: 41949

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces odonnellii 594 is an aerobe, spore-forming, mesophilic bacterium that builds a substrate mycelium and was isolated from a dark-reddish latosol under natural vegetation cover .

NCBI tax id

  • NCBI tax id: 1417980
  • Matching level: species

strain history

  • @ref: 64882
  • history: <- R. Fonseca de Souza,Brasil; 594 <- A. A. Linhares

doi: 10.13145/bacdive141109.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces odonnellii
  • full scientific name: Streptomyces odonnellii Pereira et al. 2017

@ref: 64882

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces odonnellii

full scientific name: Streptomyces odonnellii Pereira et al. 2017

strain designation: 594

type strain: yes

Morphology

cell morphology

  • @ref: 44017
  • gram stain: positive
  • motility: no

multicellular morphology

@refforms multicellular complexcomplex namecomplex color
44017yessubstrate myceliumyellowish brown
44017yesaerial myceliumwhite

pigmentation

  • @ref: 44017
  • production: no

multimedia

  • @ref: 64882
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41949.jpg
  • caption: Medium 987 228°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 64882
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
44017positivegrowth28mesophilic
44017nogrowth45thermophilic
64882positivegrowth28mesophilic

culture pH

  • @ref: 44017
  • ability: positive
  • type: growth
  • pH: 4.3

Physiology and metabolism

oxygen tolerance

  • @ref: 44017
  • oxygen tolerance: aerobe

spore formation

  • @ref: 44017
  • spore description: spiral chains of spiny-surfaced spores
  • type of spore: spore
  • spore formation: yes

halophily

  • @ref: 44017
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 4 %

observation

@refobservation
44017grows well on ISP (International Streptomyces Projec)-2, ISP-4, ISP-5 and Czapek's agar media
44017melanin production is observed on tyrosine agar but not on peptone/yeast extract/iron agar
44017grows in the presence of crystal violet (0.0001 %)
44017grows not in the presence of sodium azide (0.1 %), phenol (0.1 %)
44017colour of the substrate and aerial mycelium is not sensitive to pH

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4401715676allantoin-assimilation
4401716235guanine-assimilation
4401717309pectin-assimilation
4401716199urea-assimilation
4401715318xanthine-assimilation
4401715963ribitol-carbon source
4401752071dextran-carbon source
4401717268myo-inositol-carbon source
4401717151xylitol-carbon source
4401729016arginine-nitrogen source
4401715356cysteine-nitrogen source
4401716643L-methionine-nitrogen source
4401717632nitrate-reduction
4401718305arbutin+assimilation
4401717029chitin+assimilation
440174767elastin+assimilation
440175291gelatin+assimilation
4401717368hypoxanthine+assimilation
4401717895L-tyrosine+assimilation
4401728017starch+assimilation
4401737166xylan+assimilation
4401717057cellobiose+carbon source
4401715824D-fructose+carbon source
4401712936D-galactose+carbon source
4401717634D-glucose+carbon source
4401716024D-mannose+carbon source
4401765327D-xylose+carbon source
4401715443inulin+carbon source
4401730849L-arabinose+carbon source
4401762345L-rhamnose+carbon source
4401717716lactose+carbon source
4401729864mannitol+carbon source
4401728053melibiose+carbon source
4401716634raffinose+carbon source
4401717814salicin+carbon source
4401732954sodium acetate+carbon source
4401753258sodium citrate+carbon source
4401717992sucrose+carbon source
4401727082trehalose+carbon source
44017182404-hydroxy-L-proline+nitrogen source
4401717196L-asparagine+nitrogen source
4401717295L-phenylalanine+nitrogen source
4401717115L-serine+nitrogen source
4401716414L-valine+nitrogen source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
4401717833gentamicinyesyes
440177507neomycinyesyes
4401717076streptomycinyesyes
4401718208penicillin gyesyes
4401728001vancomycinyesyes

metabolite production

  • @ref: 44017
  • Chebi-ID: 15138
  • metabolite: sulfide
  • production: no

enzymes

  • @ref: 44017
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
44017a dark-reddish latosol under natural vegetation cover (cerrado = savanna vegetation)BrazilBRAMiddle and South America
64882dark-reddish soil (latosol) under cerrado (savanna) vegetation coverBrazilBRAMiddle and South America

isolation source categories

Cat1Cat2Cat3
#Climate#Hot#Tropical
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 64882
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64882
  • description: Streptomyces odonnellii strain 594 16S ribosomal RNA gene, partial sequence
  • accession: EU621880
  • length: 1427
  • database: ena
  • NCBI tax ID: 1417980

GC content

  • @ref: 64882
  • GC-content: 70.4
  • method: sequence analysis

External links

@ref: 64882

culture collection no.: IMPPG 594, DSM 41949, NRRL B-24891

straininfo link

  • @ref: 96858
  • straininfo: 396519

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29087276Streptomyces odonnellii sp. nov., a proteolytic streptomycete isolated from soil under cerrado (savanna) vegetation cover.Pereira PHF, Macrae A, Reinert F, de Souza RF, Coelho RRR, Potter G, Klenk HP, Labeda DPInt J Syst Evol Microbiol10.1099/ijsem.0.0024462017Bacterial Typing Techniques, Base Composition, Brazil, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, *Grassland, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny30993571Streptomyces corynorhini sp. nov., isolated from Townsend's big-eared bats (Corynorhinus townsendii).Hamm PS, Caimi NA, Northup DE, Valdez EW, Buecher DC, Dunlap CA, Labeda DP, Porras-Alfaro AAntonie Van Leeuwenhoek10.1007/s10482-019-01261-z2019Animals, Bacterial Typing Techniques, Base Composition, Chiroptera/*microbiology, Metabolic Networks and Pathways/genetics, Microscopy, Electron, Scanning, Multilocus Sequence Typing, New Mexico, Nucleic Acid Hybridization, Phylogeny, Spores, Bacterial/ultrastructure, Streptomyces/*classification/genetics/*isolation & purification/physiology, Whole Genome SequencingEnzymology
Phylogeny31674894Streptomyces paludis sp. nov., isolated from an alpine wetland soil.Zhao J, Tang X, Li K, Guo Y, Feng M, Gao JInt J Syst Evol Microbiol10.1099/ijsem.0.0038212020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44017Pedro Henrique Freitas Pereira, Andrew Macrae, Fernanda Reinert, Rodrigo Fonseca de Souza, Rosalie Reed Rodrigues Coelho, Gabrielle Pötter, Hans-Peter Klenk, David P. LabedaStreptomyces odonnellii sp. nov., a proteolytic streptomycete isolated from soil under cerrado (savanna) vegetation cover10.1099/ijsem.0.002446IJSEM 67: 5211-5215 201729087276
64882Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-41949Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41949)
96858Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396519.1