Strain identifier

BacDive ID: 141095

Type strain: Yes

Species: Franconibacter daqui

Strain Designation: DL503

NCBI tax ID(s): 2047724 (species)

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General

@ref: 44004

BacDive-ID: 141095

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, coccus-shaped

description: Franconibacter daqui DL503 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from Daqu sample.

NCBI tax id

  • NCBI tax id: 2047724
  • Matching level: species

doi: 10.13145/bacdive141095.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Franconibacter
  • species: Franconibacter daqui
  • full scientific name: Franconibacter daqui Gao et al. 2017

@ref: 44004

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Franconibacter

species: Franconibacter daqui

strain designation: DL503

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
44004negative2.0-3.3 µm0.9-1.1 µmcoccus-shapedyes
69480negative99.5

colony morphology

  • @ref: 44004
  • colony color: yellow
  • medium used: GBP and sheep blood agar

Culture and growth conditions

culture medium

  • @ref: 44004
  • name: GBP and sheep blood agar
  • growth: yes
  • composition: glucose (5 g/L), peptone (10 g/L), beef extract (3 g/L), MgSO4 7H2O (2 g/L), agar (20 g/L), pH 7.0

culture temp

@refgrowthtypetemperature
44004positiveoptimum20-45
44004positivegrowth10-50

culture pH

@refabilitytypepHPH range
44004positiveoptimum5.0-10.0alkaliphile
44004positivegrowth4.0-11.0acidophile

Physiology and metabolism

oxygen tolerance

  • @ref: 44004
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
44004no
69481no100

halophily

@refsaltgrowthtested relationconcentration
44004NaClpositiveoptimum1.5 %
44004NaClpositivegrowth0-5 %

observation

@refobservation
44004colonies are smooth
44004ubiquinone Q-8 and menaquinone MK-8 are the predominating isoprenoid quinones

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4400418305arbutin+builds acid from
4400417057cellobiose+builds acid from
4400418333D-arabitol+builds acid from
4400415824D-fructose+builds acid from
4400412936D-galactose+builds acid from
4400462318D-lyxose+builds acid from
4400416899D-mannitol+builds acid from
4400416024D-mannose+builds acid from
4400465327D-xylose+builds acid from
440044853esculin+builds acid from
4400428066gentiobiose+builds acid from
4400424265gluconate+builds acid from
4400417234glucose+builds acid from
4400417754glycerol+builds acid from
4400428087glycogen+builds acid from
4400430849L-arabinose+builds acid from
4400417716lactose+builds acid from
4400417306maltose+builds acid from
4400429864mannitol+builds acid from
4400428053melibiose+builds acid from
4400428037N-acetylgalactosamine+builds acid from
44004potassium 2-dehydro-D-gluconate+builds acid from
4400416634raffinose+builds acid from
4400426546rhamnose+builds acid from
4400433942ribose+builds acid from
4400417814salicin+builds acid from
4400417992sucrose+builds acid from
4400427082trehalose+builds acid from
4400427613amygdalin+fermentation
4400422599arabinose+fermentation
4400417234glucose+fermentation
4400429864mannitol+fermentation
4400428053melibiose+fermentation
4400426546rhamnose+fermentation
4400417992sucrose+fermentation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitive
4400428971ampicillinyesyes
440043542cephalothinyesyes
4400417698chloramphenicolyesyes
4400448923erythromycinyesyes
4400417833gentamicinyesyes
440046104kanamycinyesyes
440047507neomycinyesyes
4400428368novobiocinyesyes
4400417334penicillinyesyes
4400428077rifampicinyesyes
4400417076streptomycinyesyes

enzymes

@refvalueactivityec
44004catalase+1.11.1.6
44004chymotrypsin+3.4.4.5
44004alpha-fucosidase+3.2.1.51
44004beta-glucuronidase+3.2.1.31
44004alpha-mannosidase+3.2.1.24
44004amylase-
44004N-acetyl-beta-glucosaminidase-3.2.1.52
44004acid phosphatase-3.1.3.2
44004alkaline phosphatase-3.1.3.1
44004cystine arylamidase-3.4.11.3
44004esterase-
44004esterase Lipase (C 8)-
44004alpha-galactosidase-3.2.1.22
44004beta-galactosidase-3.2.1.23
44004alpha-glucosidase-3.2.1.20
44004beta-glucosidase-3.2.1.21
44004leucine arylamidase-3.4.11.1
44004lipase (C 14)-
44004naphthol-AS-BI-phosphohydrolase-
44004trypsin-3.4.21.4
44004valine arylamidase-
44004nitrate reductase+1.7.99.4

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    44004C12:04.3
    44004C14:08.4
    44004C16:032.2
    44004C16:0 3OH4
    44004C16:1ω7c and/or C16:1ω6c10.2
    44004C17:0 cyclo14
    44004C17:1iso I and/or C17:1 anteisoB16.7
    44004C18:1ω7c and/or C18:1ω6c12.4
    44004C19:0cycloω8c1.5
  • type of FA analysis: whole cell analysis
  • incubation medium: trypticase soy broth
  • agar/liquid: agar
  • incubation temperature: 37
  • incubation time: 2
  • software version: Sherlock 6.1
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 44004
  • sample type: Daqu sample
  • geographic location: Maotai, Renhuai City
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 32.3346
  • longitude: 119.2

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Engineered#Food production#Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_6265.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_3668;98_4642;99_6265&stattab=map
  • Last taxonomy: Franconibacter
  • 16S sequence: KX865161
  • Sequence Identity:
  • Total samples: 1207
  • soil counts: 31
  • aquatic counts: 66
  • animal counts: 1025
  • plant counts: 85

Sequence information

16S sequences

  • @ref: 44004
  • description: Franconibacter daqui strain DL503 16S ribosomal RNA gene, partial sequence
  • accession: KX865161
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Franconibacter daqui CGMCC 1.15944GCA_014644275contigncbi2047724
66792Franconibacter daqui strain CGMCC 1.159442047724.3wgspatric2047724

GC content

  • @ref: 44004
  • GC-content: 53.3
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno99.5no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.417yes
69480spore-formingspore-formingAbility to form endo- or exosporesno88.262no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no69.829yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno99.75no
69480flagellatedmotile2+Ability to perform flagellated movementyes75.587no

External links

@ref: 44004

culture collection no.: LMG 29914, CGMCC 1.15944

literature

  • topic: Phylogeny
  • Pubmed-ID: 29034856
  • title: Franconibacter daqui sp. nov., a facultatively alkaliphilic species isolated from a Daqu sample.
  • authors: Gao Z, Su C, Yang X, Sun D, Zeng C, Chen M, Hu W, Zhang C
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002358
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Fermented Foods/*microbiology, *Food Microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Biotechnology

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44004Ziqing Gao, Chenglin Su, Xueying Yang, Di Sun, Chao Zeng, Ming Chen, Wenzhong Hu, Chunzhi ZhangFranconibacter daqui sp. nov., a facultatively alkaliphilic species isolated from a Daqu sample10.1099/ijsem.0.002358IJSEM 67: 4962-4966 201729034856
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1