Strain identifier

BacDive ID: 141090

Type strain: Yes

Species: Pseudofulvibacter gastropodicola

Strain history: K. K. Kwon; Korea Inst. of Ocean Sci. & Technol., South Korea; MEBiC08749.

NCBI tax ID(s): 1524960 (species)

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General

@ref: 43997

BacDive-ID: 141090

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Pseudofulvibacter gastropodicola KCCM 43046 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from marine conch.

NCBI tax id

  • NCBI tax id: 1524960
  • Matching level: species

strain history

  • @ref: 67770
  • history: K. K. Kwon; Korea Inst. of Ocean Sci. & Technol., South Korea; MEBiC08749.

doi: 10.13145/bacdive141090.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Pseudofulvibacter
  • species: Pseudofulvibacter gastropodicola
  • full scientific name: Pseudofulvibacter gastropodicola Yang et al. 2016

@ref: 43997

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Pseudofulvibacter

species: Pseudofulvibacter gastropodicola

type strain: yes

Morphology

cell morphology

  • @ref: 43997
  • gram stain: negative
  • cell length: 1.8-2.3 µm
  • cell width: 0.4-0.6 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refcolony colorcolony shapemedium usedcolony sizeincubation period
43997yellowcircularsolid marine agar 2216
439970.5-1.0 mm
439972-3 days

Culture and growth conditions

culture medium

  • @ref: 43997
  • name: solid marine agar 2216
  • growth: yes

culture temp

@refgrowthtypetemperature
43997positiveoptimum25
43997positivegrowth5-31
67770positivegrowth25

culture pH

@refabilitytypepHPH range
43997positivegrowth6.0-8.5alkaliphile
43997positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43997
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
43997NaClpositivegrowth0-6.0 %
43997NaClpositiveoptimum2.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4399728017starch-degradation
4399717632nitrate-reduction
43997370543-hydroxybutyrate+oxidation
4399730089acetate+oxidation
4399717925alpha-D-glucose+oxidation
4399716383cis-aconitate+oxidation
4399716947citrate+oxidation
4399715570D-alanine+oxidation
4399718333D-arabitol+oxidation
4399715824D-fructose+oxidation
4399730612D-glucarate+oxidation
439978391D-gluconate+oxidation
4399716899D-mannitol+oxidation
4399716024D-mannose+oxidation
4399715740formate+oxidation
4399716865gamma-aminobutyric acid+oxidation
4399721217L-alaninamide+oxidation
4399716977L-alanine+oxidation
4399730849L-arabinose+oxidation
4399717196L-asparagine+oxidation
4399729991L-aspartate+oxidation
4399729985L-glutamate+oxidation
4399717203L-proline+oxidation
4399717115L-serine+oxidation
4399724996lactate+oxidation
4399751850methyl pyruvate+oxidation
4399775146monomethyl succinate+oxidation
4399717272propionate+oxidation
4399717148putrescine+oxidation
4399726490quinate+oxidation
43997143136succinamate+oxidation
4399753423tween 40+oxidation
4399753426tween 80+oxidation

metabolite production

  • @ref: 43997
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

enzymes

@refvalueactivityec
43997cytochrome oxidase+1.9.3.1
43997catalase+1.11.1.6
43997gelatinase+
43997alkaline phosphatase+3.1.3.1
43997acid phosphatase+3.1.3.2
43997cystine arylamidase+3.4.11.3
43997leucine arylamidase+3.4.11.1
43997valine arylamidase+
43997esterase (C 4)+
43997esterase Lipase (C 8)+
43997trypsin+3.4.21.4
43997naphthol-AS-BI-phosphohydrolase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    4399710-methyl C16:0 and/or iso-C17:1ω9c9.7
    43997C13:1at12-134.1
    43997C14:02.4
    43997C16:01.9
    43997C16:0 3OH4.7
    43997C16:1ω6c and/or C16:1ω7c9.5
    43997C13:0 iso1.8
    43997C15:0 iso28.5
    43997C15:0 iso 3OH6.8
    43997C15:1 iso G9.1
    43997C16:0 iso 3OH1.2
    43997C17:0 iso 3OH16.4
  • type of FA analysis: whole cell analysis
  • incubation medium: solid marine agar
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 2
  • software version: Sherlock 6.2
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43997marine conchSamcheok Port in the East Sea, Sea of JapanRepublic of KoreaKORAsia36.0796129.194
67770Marine conch collected at Samcheok PortRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Host

Sequence information

16S sequences

  • @ref: 43997
  • description: Pseudofulvibacter gastropodicola 16S ribosomal RNA gene, partial sequence
  • accession: KJ918743
  • database: nuccore

GC content

  • @ref: 43997
  • GC-content: 30
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43997

culture collection no.: KCCM 43046, JCM 30369, MEBiC 08749

literature

  • topic: Phylogeny
  • Pubmed-ID: 26537663
  • title: Pseudofulvibacter gastropodicola sp. nov., isolated from a marine conch and emended descriptions of the genus Pseudofulvibacter Yoon et al. 2013 and Pseudofulvibacter geojedonensis.
  • authors: Yang SH, Seo HS, Lee JH, Kim SJ, Kyoung Kwon K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000734
  • year: 2015
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/genetics/isolation & purification, Gastropoda/*microbiology, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43997Sung-Hyun Yang, Hyun-Seok Seo, Jung-Hyun Lee, Sang-Jin Kim, Kae Kyoung KwonPseudofulvibacter gastropodicola sp. nov., isolated from a marine conch and emended descriptions of the genus Pseudofulvibacter Yoon et al. 2013 and Pseudofulvibacter geojedonensis10.1099/ijsem.0.000734IJSEM 66: 430-434 201626537663
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/