Strain identifier

BacDive ID: 141084

Type strain: Yes

Species: Pseudovibrio stylochi

Strain Designation: UST20140214-052

Strain history: <- Ying Xu and Peiyuan Qian, Hong Kong Univ.

NCBI tax ID(s): 1807766 (species)

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General

@ref: 43983

BacDive-ID: 141084

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Pseudovibrio stylochi UST20140214-052 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from marine flatworm , Yung Shue O, Homg Kong.

NCBI tax id

  • NCBI tax id: 1807766
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Ying Xu and Peiyuan Qian, Hong Kong Univ.

doi: 10.13145/bacdive141084.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Stappiaceae
  • genus: Pseudovibrio
  • species: Pseudovibrio stylochi
  • full scientific name: Pseudovibrio stylochi Zhang et al. 2016

  • synonyms

    • @ref: 20215
    • synonym: Polycladidibacter stylochi

@ref: 43983

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Rhodobacteraceae

genus: Pseudovibrio

species: Pseudovibrio stylochi

strain designation: UST20140214-052

type strain: yes

Morphology

cell morphology

  • @ref: 43983
  • gram stain: negative
  • cell length: 5.0-6.0 µm
  • cell width: 0.5-0.8 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: peritrichous

colony morphology

  • @ref: 43983
  • colony color: brownish-white
  • colony shape: circular
  • medium used: Marine agar 2216

Culture and growth conditions

culture medium

  • @ref: 43983
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43983positivegrowth15-40
43983positiveoptimum25-28mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43983positivegrowth6.0-9.0alkaliphile
43983positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
43983NaClpositivegrowth1-5 %(w/v)
43983NaClpositiveoptimum3 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4398322599arabinose-fermentation
4398317268myo-inositol-fermentation
4398329864mannitol-fermentation
4398328053melibiose-fermentation
4398330911sorbitol-fermentation
439835291gelatin-hydrolysis
4398328017starch-hydrolysis
439838295beta-hydroxybutyrate+carbon source
4398317057cellobiose+carbon source
4398316947citrate+carbon source
4398315824D-fructose+carbon source
4398317634D-glucose+carbon source
4398315748D-glucuronate+carbon source
4398316024D-mannose+carbon source
4398323652dextrin+carbon source
4398317203L-proline+carbon source
4398324996lactate+carbon source
4398325115malate+carbon source
4398317306maltose+carbon source
4398351850methyl pyruvate+carbon source
4398344337N-acetyl-L-glutamate+carbon source
43983506227N-acetylglucosamine+carbon source
4398318401phenylacetate+carbon source
4398317992sucrose+carbon source
4398317748thymidine+carbon source
4398327082trehalose+carbon source
4398332528turanose+carbon source
4398327613amygdalin+fermentation
4398317234glucose+fermentation
4398326546rhamnose+fermentation
4398317992sucrose+fermentation
439834853esculin+hydrolysis
4398317632nitrate+reduction

metabolite production

@refChebi-IDmetaboliteproduction
4398316136hydrogen sulfideno
4398315688acetoinyes
4398335581indoleyes

enzymes

@refvalueactivityec
43983cytochrome oxidase+1.9.3.1
43983catalase+1.11.1.6
43983alkaline phosphatase+3.1.3.1
43983leucine arylamidase+3.4.11.1
43983alpha-glucosidase+3.2.1.20
43983beta-glucosidase+3.2.1.21
43983trypsin+/-3.4.21.4
43983acid phosphatase+/-3.1.3.2
43983naphthol-AS-BI-phosphohydrolase+/-
43983esterase (C 4)-
43983esterase Lipase (C 8)-
43983lipase (C 14)-
43983valine arylamidase-
43983cystine arylamidase-3.4.11.3
43983alpha-chymotrypsin-3.4.21.1
43983alpha-galactosidase-3.2.1.22
439836-phospho-beta-galactosidase-3.2.1.85
43983beta-glucuronidase-3.2.1.31
43983N-acetyl-beta-glucosaminidase-3.2.1.52
43983alpha-mannosidase-3.2.1.24
43983alpha-fucosidase-3.2.1.51
43983urease-3.5.1.5
43983arginine dihydrolase-3.5.3.6
43983tryptophan deaminase-4.1.99.1
43983lysine decarboxylase-4.1.1.18
43983ornithine decarboxylase-4.1.1.17

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment culture
43983marine flatworm (Stylochus sp.), Yung Shue O, Homg KongYung Shue O, Homg KongHong KongHKGAsiaMarine agar 2216
67771From flatwormHong KongHKGAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)

taxonmaps

  • @ref: 69479
  • File name: preview.99_992.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_441;97_667;98_774;99_992&stattab=map
  • Last taxonomy: Pseudovibrio
  • 16S sequence: KP207600
  • Sequence Identity:
  • Total samples: 500
  • soil counts: 28
  • aquatic counts: 414
  • animal counts: 51
  • plant counts: 7

Sequence information

16S sequences

  • @ref: 43983
  • description: 16S rRNA gene sequence
  • accession: KP207600
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudovibrio stylochi UST20140214-052GCA_001562055contigncbi1807766
66792Pseudovibrio stylochi UST20140214-0522791355020draftimg1807766

GC content

  • @ref: 43983
  • GC-content: 47
  • method: genome sequence analysis

External links

@ref: 43983

culture collection no.: KCTC 42384, MCCC 1K00452

literature

  • topic: Phylogeny
  • Pubmed-ID: 26907771
  • title: Pseudovibrio stylochi sp. nov., isolated from a marine flatworm.
  • authors: Zhang Y, Li Q, Tian R, Lai Q, Xu Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000984
  • year: 2016
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Platyhelminths/*microbiology, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43983Yu Zhang, Qi Li, Renmao Tian, Qiliang Lai, Ying XuPseudovibrio stylochi sp. nov., isolated from a marine flatworm10.1099/ijsem.0.000984IJSEM 66: 2025-2029 201626907771
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/