Strain identifier

BacDive ID: 141075

Type strain: Yes

Species: Flavobacterium suaedae

Strain Designation: G16-7

NCBI tax ID(s): 1767027 (species)

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General

@ref: 43969

BacDive-ID: 141075

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Flavobacterium suaedae G16-7 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface sterilized root of Suaeda corniculata from banks of Wuliangsuhai lake, Bayannaoer, inner Mongolia, northern China.

NCBI tax id

  • NCBI tax id: 1767027
  • Matching level: species

doi: 10.13145/bacdive141075.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium suaedae
  • full scientific name: Flavobacterium suaedae Sun et al. 2016

@ref: 43969

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium suaedae

strain designation: G16-7

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapeconfidence
43969negative0.9-1.2 µm0.4-0.6 µmrod-shaped
69480negative99.998

colony morphology

  • @ref: 43969
  • colony size: 3.0-4.0 mm
  • colony color: yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Luria-Bertani agar

Culture and growth conditions

culture medium

@refnamegrowth
43969LB (Luria-Bertani) MEDIUMyes
43969Nutrient agar (NA)yes
43969Reasoner's 2A agar (R2A)no
43969Trypticase soy agaryes

culture temp

@refgrowthtypetemperaturerange
43969positivegrowth15-40
43969positiveoptimum30-33mesophilic

culture pH

@refabilitytypepH
43969positivegrowth6.0-8.0
43969positiveoptimum6

Physiology and metabolism

oxygen tolerance

  • @ref: 43969
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
43969no
69481no100
69480no100

halophily

@refsaltgrowthtested relationconcentration
43969NaClpositivegrowth1.0-8.0 %(w/v)
43969NaClpositiveoptimum4 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43969309162-oxoglutarate-assimilation
4396927689decanoate-assimilation
4396915824D-fructose-assimilation
4396912936D-galactose-assimilation
4396917634D-glucose-assimilation
4396916899D-mannitol-assimilation
4396916024D-mannose-assimilation
4396917924D-sorbitol-assimilation
4396965327D-xylose-assimilation
4396916236ethanol-assimilation
4396929987glutamate-assimilation
4396917268myo-inositol-assimilation
4396930849L-arabinose-assimilation
4396916467L-arginine-assimilation
4396962345L-rhamnose-assimilation
4396930924L-tartrate-assimilation
4396917716lactose-assimilation
4396925115malate-assimilation
4396917306maltose-assimilation
4396917790methanol-assimilation
43969506227N-acetylglucosamine-assimilation
4396918401phenylacetate-assimilation
4396932032potassium gluconate-assimilation
4396917272propionate-assimilation
4396916634raffinose-assimilation
4396953258sodium citrate-assimilation
4396930031succinate-assimilation
4396917992sucrose-assimilation
4396917151xylitol-assimilation
4396917234glucose-fermentation
439694853esculin-hydrolysis
439695291gelatin-hydrolysis
4396917632nitrate-reduction
4396917234glucose+fermentation
4396928017starch+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4396928001vancomycinyesyes30 µg (disc)
4396928077rifampicinyesyes5 µg (disc)
4396945924trimethoprimyesyes5 µg (disc)
439693547cephradineyesyes30 µg (disc)
4396959062polymyxinyesyes300 Unit (disc)
4396927902tetracyclineyesyes30 µg (disc)
4396928669bacitracinyesyes0.04 Unit (disc)
439699215spectinomycinyesyes100 µg (disc)
439696472lincomycinyesyes2 µg (disc)
4396928971ampicillinyesyes10 µg (disc)
4396948923erythromycinyesyes15 µg (disc)
4396928368novobiocinyesyes30 µg (disc)
439693393carbenicillinyesyes100 µg (disc)
439692676amoxicillinyesyes10 µg (disc)
4396948844roxithromycinyesyes15 µg (disc)
439696104kanamycinyesyes30 µg (disc)
4396918208penicillin gyesyes10 Unit (disc)
4396917833gentamicinyesyes10 µg (disc)
4396917076streptomycinyesyes10 µg (disc)

metabolite production

  • @ref: 43969
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 43969
  • Chebi-ID: 17234
  • metabolite: glucose
  • methylred-test: -

enzymes

@refvalueactivityec
43969alkaline phosphatase+3.1.3.1
43969esterase (C 4)+
43969esterase Lipase (C 8)+
43969leucine arylamidase+3.4.11.1
43969acid phosphatase+3.1.3.2
43969naphthol-AS-BI-phosphohydrolase+
43969cytochrome oxidase+1.9.3.1
43969valine arylamidase-
43969cystine arylamidase-3.4.11.3
43969trypsin-3.4.21.4
43969alpha-glucosidase-3.2.1.20
43969beta-glucosidase-3.2.1.21
43969catalase-1.11.1.6
43969arginine dihydrolase-3.5.3.6
43969urease-3.5.1.5
43969lipase (C 14)-
43969alpha-chymotrypsin-3.4.21.1
43969alpha-galactosidase-3.2.1.22
43969beta-galactosidase-3.2.1.23
43969beta-glucuronidase-3.2.1.31
43969N-acetyl-beta-glucosaminidase-3.2.1.52
43969alpha-mannosidase-3.2.1.24
43969alpha-fucosidase-3.2.1.51

Isolation, sampling and environmental information

isolation

  • @ref: 43969
  • sample type: surface sterilized root of Suaeda corniculata from banks of Wuliangsuhai lake, Bayannaoer, inner Mongolia, northern China
  • geographic location: Wuliangsuhai lake, Bayannaoer, inner Mongolia
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 40.9
  • longitude: 108.7
  • enrichment culture: Luria-Bertani agar
  • enrichment culture duration: 5 days
  • enrichment culture temperature: 30

isolation source categories

Cat1Cat2Cat3
#Condition#Saline
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Sterilized plant part

Sequence information

16S sequences

  • @ref: 43969
  • description: 16S rRNA gene sequence
  • accession: KT284905
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium suaedae CGMCC 1.15461GCA_014642915contigncbi1767027
66792Flavobacterium suaedae strain CGMCC 1.154611767027.3wgspatric1767027

GC content

  • @ref: 43969
  • GC-content: 34.2
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno88.186no
gram-positiveno98.666yes
anaerobicno98.556yes
aerobicyes82.809yes
halophileno75.173no
spore-formingno94.751yes
glucose-utilyes76.633yes
flagellatedno95.595no
thermophileno98.158yes
glucose-fermentno90.521no

External links

@ref: 43969

culture collection no.: CGMCC 1.15461, KCTC 42947

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26868635Flavobacterium suaedae sp. nov., an endophyte isolated from the root of Suaeda corniculata.Sun JQ, Xu L, Liu M, Wang XY, Wu XLInt J Syst Evol Microbiol10.1099/ijsem.0.0009672016Bacterial Typing Techniques, Base Composition, Chenopodiaceae/*microbiology, China, DNA, Bacterial/genetics, Endophytes/classification/genetics/isolation & purification, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryEnzymology
Phylogeny35077344Flavobacterium coralii sp. nov., a marine bacterium isolated from coral culture seawater.Sun H, Zheng H, Wang X, Jiang Y, Liao B, Li A, Xiao BInt J Syst Evol Microbiol10.1099/ijsem.0.0052012022Animals, *Anthozoa/microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Flavobacterium/classification/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43969Ji-Quan Sun, Lian Xu, Min Liu, Xin-Ying Wang, Xiao-Lei WuFlavobacterium suaedae sp. nov., an endophyte isolated from the root of Suaeda corniculata10.1099/ijsem.0.000967IJSEM 66: 1943-1949 201626868635
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1