Strain identifier
BacDive ID: 141031
Type strain: 
Species: Psychrobacter piechaudii
Strain Designation: 1232, 1232SS
Strain history: CIP <- 2002, Inst. Pasteur, Paris, France: strain R715, Moraxella phenylpyronica <- M. Piéchaud, Inst. Pasteur, Paris, France : strain 1232SS
NCBI tax ID(s): 1945521 (species)
version 8.1 (current version)
General
@ref: 43912
BacDive-ID: 141031
keywords: genome sequence, Bacteria, aerobe, Gram-negative, coccus-shaped, colony-forming
description: Psychrobacter piechaudii 1232 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from human origin.
NCBI tax id
- NCBI tax id: 1945521
- Matching level: species
strain history
- @ref: 121825
- history: CIP <- 2002, Inst. Pasteur, Paris, France: strain R715, Moraxella phenylpyronica <- M. Piéchaud, Inst. Pasteur, Paris, France : strain 1232SS
doi: 10.13145/bacdive141031.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter piechaudii
- full scientific name: Psychrobacter piechaudii Hurtado-Ortiz et al. 2017
@ref: 43912
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter piechaudii
strain designation: 1232, 1232SS
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell shape | motility |
|---|---|---|---|
| 43912 | negative | coccus-shaped | no |
| 121825 | negative | rod-shaped | no |
colony morphology
- @ref: 43912
- colony size: 1-2 mm
- colony color: colourless
- colony shape: circular
- incubation period: 2 days
- medium used: Blood agar
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 43912 | Blood agar | yes | |
| 121825 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 43912 | positive | growth | 0-37 | |
| 43912 | positive | optimum | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 43912
- oxygen tolerance: aerobe
spore formation
- @ref: 43912
- spore formation: no
halophily
- @ref: 43912
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-15 %(w/v)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43912 | 22599 | arabinose | - | builds acid from |
| 43912 | 16947 | citrate | - | builds acid from |
| 43912 | 17634 | D-glucose | - | builds acid from |
| 43912 | 25115 | malate | - | builds acid from |
| 43912 | 37684 | mannose | - | builds acid from |
| 43912 | 17632 | nitrate | - | reduction |
| 43912 | 28816 | 2-deoxy-d-ribose | + | carbon source |
| 43912 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
| 43912 | 17315 | D-glucosamine | + | carbon source |
| 43912 | 16988 | D-ribose | + | carbon source |
| 43912 | 65327 | D-xylose | + | carbon source |
| 43912 | 30849 | L-arabinose | + | carbon source |
| 43912 | 62320 | L-lyxose | + | carbon source |
| 43912 | 53424 | tween 20 | + | carbon source |
| 43912 | 53423 | tween 40 | + | carbon source |
| 43912 | 53426 | tween 80 | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 43912 | catalase | + | 1.11.1.6 |
| 43912 | cytochrome oxidase | + | 1.9.3.1 |
| 43912 | alkaline phosphatase | - | 3.1.3.1 |
| 43912 | cystine arylamidase | 3.4.11.3 | |
| 43912 | esterase | + |
Isolation, sampling and environmental information
isolation
- @ref: 43912
- sample type: human origin
isolation source categories
- Cat1: #Host
- Cat2: #Human
Safety information
risk assessment
- @ref: 121825
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Psychrobacter sp. CIP 110854 strain Psychrobacter_piechaudii
- accession: 1945521.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 1945521
GC content
- @ref: 43912
- GC-content: 42.3
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.666 | no |
| gram-positive | no | 98.242 | yes |
| anaerobic | no | 98.206 | yes |
| aerobic | yes | 82.603 | yes |
| halophile | yes | 69.893 | no |
| spore-forming | no | 96.847 | yes |
| glucose-util | no | 66.843 | no |
| flagellated | no | 94.289 | no |
| thermophile | no | 97.911 | yes |
| glucose-ferment | no | 92.695 | no |
External links
@ref: 43912
culture collection no.: CIP 110854, CECT 9185
straininfo link
- @ref: 96844
- straininfo: 413276
literature
- topic: Phylogeny
- Pubmed-ID: 28840795
- title: Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.
- authors: Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002065
- year: 2017
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, France, *Phylogeny, Psychrobacter/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 43912 | Raquel Hurtado-Ortiz, Anissa Nazimoudine, Alexis Criscuolo, Perrine Hugon, Damien Mornico, Sylvain Brisse, Chantal Bizet, Dominique Clermont | Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter | 10.1099/ijsem.0.002065 | IJSEM 67: 3192-3197 2017 | 28840795 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 96844 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID413276.1 | |||
| 121825 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110854 | Collection of Institut Pasteur (CIP 110854) |