Strain identifier
BacDive ID: 141029
Type strain: 
Species: Psychrobacter pasteurii
Strain Designation: A1019, A1019SS
Strain history: CIP <- 2002, Inst. Pasteur, Paris, France: strain R714, Moraxella phenylpyronica <- M. Piéchaud, Inst. Pasteur, Paris, France: strain A1019SS
NCBI tax ID(s): 1945520 (species)
version 8.1 (current version)
General
@ref: 43912
BacDive-ID: 141029
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, coccus-shaped, colony-forming
description: Psychrobacter pasteurii A1019 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from human origin.
NCBI tax id
- NCBI tax id: 1945520
- Matching level: species
strain history
- @ref: 121625
- history: CIP <- 2002, Inst. Pasteur, Paris, France: strain R714, Moraxella phenylpyronica <- M. Piéchaud, Inst. Pasteur, Paris, France: strain A1019SS
doi: 10.13145/bacdive141029.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter pasteurii
- full scientific name: Psychrobacter pasteurii Hurtado-Ortiz et al. 2017
@ref: 43912
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter pasteurii
strain designation: A1019, A1019SS
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell shape | motility | confidence |
|---|---|---|---|---|
| 43912 | negative | coccus-shaped | no | |
| 69480 | no | 96.614 | ||
| 69480 | negative | 99.997 | ||
| 121625 | negative | rod-shaped |
colony morphology
- @ref: 43912
- colony size: 1-2 mm
- colony color: colourless
- colony shape: circular
- incubation period: 2 days
- medium used: Blood agar
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 43912 | Blood agar | yes | |
| 43912 | Brain Heart Infusion | yes | |
| 121625 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 43912 | positive | growth | 0-37 | |
| 43912 | positive | optimum | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 43912
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.996 |
halophily
- @ref: 43912
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-15 %(w/v)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43912 | 22599 | arabinose | - | builds acid from |
| 43912 | 16947 | citrate | - | builds acid from |
| 43912 | 17634 | D-glucose | - | builds acid from |
| 43912 | 25115 | malate | - | builds acid from |
| 43912 | 37684 | mannose | - | builds acid from |
| 43912 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
| 43912 | 17108 | D-arabinose | + | carbon source |
| 43912 | 17315 | D-glucosamine | + | carbon source |
| 43912 | 16988 | D-ribose | + | carbon source |
| 43912 | 65327 | D-xylose | + | carbon source |
| 43912 | 23652 | dextrin | + | carbon source |
| 43912 | 30849 | L-arabinose | + | carbon source |
| 43912 | 62320 | L-lyxose | + | carbon source |
| 43912 | 53424 | tween 20 | + | carbon source |
| 43912 | 53423 | tween 40 | + | carbon source |
| 43912 | 53426 | tween 80 | + | carbon source |
| 43912 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 43912 | cytochrome oxidase | + | 1.9.3.1 |
| 43912 | catalase | + | 1.11.1.6 |
| 43912 | urease | + | 3.5.1.5 |
| 43912 | esterase | + | |
| 43912 | lipase (C 14) | + | |
| 43912 | cystine arylamidase | - | 3.4.11.3 |
Isolation, sampling and environmental information
isolation
- @ref: 43912
- sample type: human origin
isolation source categories
- Cat1: #Host
- Cat2: #Human
taxonmaps
- @ref: 69479
- File name: preview.99_5055.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_1308;98_3777;99_5055&stattab=map
- Last taxonomy: Psychrobacter
- 16S sequence: KY292375
- Sequence Identity:
- Total samples: 25409
- soil counts: 2596
- aquatic counts: 5137
- animal counts: 17078
- plant counts: 598
Safety information
risk assessment
- @ref: 121625
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 43912
- description: 16S rRNA gene sequence
- accession: KY292375
- database: nuccore
Genome sequences
- @ref: 66792
- description: Psychrobacter sp. CIP 110853 strain Psychrobacter_pasteurii
- accession: 1945520.4
- assembly level: wgs
- database: patric
- NCBI tax ID: 1945520
GC content
- @ref: 43912
- GC-content: 42.7
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 89.981 | no |
| gram-positive | no | 97.594 | no |
| anaerobic | no | 98.104 | yes |
| aerobic | yes | 83.635 | yes |
| halophile | yes | 74.233 | no |
| spore-forming | no | 96.562 | no |
| glucose-util | no | 64.804 | no |
| flagellated | no | 92.204 | yes |
| thermophile | no | 97.386 | yes |
| glucose-ferment | no | 91.571 | no |
External links
@ref: 43912
culture collection no.: CIP 110853, CECT 9184
straininfo link
- @ref: 96842
- straininfo: 413593
literature
- topic: Phylogeny
- Pubmed-ID: 28840795
- title: Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.
- authors: Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002065
- year: 2017
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, France, *Phylogeny, Psychrobacter/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 43912 | Raquel Hurtado-Ortiz, Anissa Nazimoudine, Alexis Criscuolo, Perrine Hugon, Damien Mornico, Sylvain Brisse, Chantal Bizet, Dominique Clermont | Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter | 10.1099/ijsem.0.002065 | IJSEM 67: 3192-3197 2017 | 28840795 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 96842 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID413593.1 | |||
| 121625 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110853 | Collection of Institut Pasteur (CIP 110853) |