Strain identifier
version 8 (current version)
General
@ref: 43568
BacDive-ID: 141023
keywords: genome sequence, Bacteria, aerobe, mesophilic
description: Caballeronia pedi LMG 29323 is an aerobe, mesophilic bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 1777141
- Matching level: species
doi: 10.13145/bacdive141023.20230509.8
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Caballeronia
- species: Caballeronia pedi
- full scientific name: Caballeronia pedi (Peeters et al. 2016) Dobritsa et al. 2017
synonyms
- @ref: 20215
- synonym: Burkholderia pedi
@ref: 43568
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Caballeronia
species: Caballeronia pedi
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 90.174 | |
| 69480 | 99.986 | negative |
Culture and growth conditions
culture temp
- @ref: 63475
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 63475
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.977 |
Isolation, sampling and environmental information
isolation
- @ref: 63475
- sample type: Soil
- sampling date: 2014
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Caballeronia pedi LMG 29323 | GCA_001544915 | contig | ncbi | 1777141 |
| 66792 | Burkholderia sp. strain LMG 29323 | 36773.29 | wgs | patric | 36773 |
| 66792 | Caballeronia pedi LMG 29323 | 2724679460 | draft | img | 1777141 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 99.986 | yes |
| anaerobic | no | 99.063 | yes |
| spore-forming | no | 100 | no |
| spore-forming | no | 99.977 | no |
| thermophile | no | 99.883 | no |
| motile | yes | 90.174 | no |
External links
@ref: 43568
culture collection no.: LMG 29323, CCUG 68406
literature
- Pubmed-ID: 27375597
- title: Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.
- authors: Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2016.00877
- year: 2016
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 43568 | Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour | Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov. | 10.1099/ijsem.0.002202 | IJSEM 67: 3846-3853 2017 | 28879843 | |
| 63475 | Curators of the CCUG | https://www.ccug.se/strain?id=68406 | Culture Collection University of Gothenburg (CCUG) (CCUG 68406) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |