Strain identifier

BacDive ID: 141022

Type strain: Yes

Species: Caballeronia hypogeia

Strain Designation: R-52609

Strain history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-52609

NCBI tax ID(s): 1777140 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43568

BacDive-ID: 141022

keywords: genome sequence, Bacteria, aerobe, mesophilic, motile

description: Caballeronia hypogeia R-52609 is an aerobe, mesophilic, motile bacterium that was isolated from Soil.

NCBI tax id

  • NCBI tax id: 1777140
  • Matching level: species

strain history

  • @ref: 120034
  • history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-52609

doi: 10.13145/bacdive141022.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Caballeronia
  • species: Caballeronia hypogeia
  • full scientific name: Caballeronia hypogeia (Peeters et al. 2016) Dobritsa et al. 2017
  • synonyms

    • @ref: 20215
    • synonym: Burkholderia hypogeia

@ref: 43568

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Caballeronia

species: Caballeronia hypogeia

strain designation: R-52609

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes90.629
6948099.977negative
120034yesnegativerod-shaped

Culture and growth conditions

culture medium

  • @ref: 120034
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 63476
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63476
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.99

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinentisolation date
63476Soil2014BelgiumBELEurope
120034Environment, SoilBelgiumBELEurope2014-01-02

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 120034
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Caballeronia hypogeia LMG 29322GCA_001544875contigncbi1777140
66792Burkholderia sp. strain LMG 2932236773.28wgspatric36773
66792Caballeronia hypogeia LMG 293222713896993draftimg1777140

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.496no
anaerobicno98.569yes
halophileno93.391no
spore-formingno93.934no
glucose-utilyes88.71no
aerobicyes91.574yes
motileyes87.112no
flagellatedno85.487no
thermophileno99.381no
glucose-fermentno89.082no

External links

@ref: 43568

culture collection no.: LMG 29322, CCUG 68407, CIP 111006

straininfo link

  • @ref: 96837
  • straininfo: 410656

literature

  • Pubmed-ID: 27375597
  • title: Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.
  • authors: Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P
  • journal: Front Microbiol
  • DOI: 10.3389/fmicb.2016.00877
  • year: 2016

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43568Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour SamadpourTransfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.10.1099/ijsem.0.002202IJSEM 67: 3846-3853 201728879843
63476Curators of the CCUGhttps://www.ccug.se/strain?id=68407Culture Collection University of Gothenburg (CCUG) (CCUG 68407)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
96837Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID410656.1
120034Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111006Collection of Institut Pasteur (CIP 111006)