Strain identifier

BacDive ID: 141018

Type strain: Yes

Species: Caballeronia catudaia

Strain Designation: R-50699

Strain history: CIP <- 2016, P. Vandamme, Gent Univ., Gent, Belgium: strain R-50699

NCBI tax ID(s): 1777136 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43568

BacDive-ID: 141018

keywords: genome sequence, Bacteria, aerobe, mesophilic, motile

description: Caballeronia catudaia R-50699 is an aerobe, mesophilic, motile bacterium that was isolated from Rhizosphere soil.

NCBI tax id

  • NCBI tax id: 1777136
  • Matching level: species

strain history

  • @ref: 117218
  • history: CIP <- 2016, P. Vandamme, Gent Univ., Gent, Belgium: strain R-50699

doi: 10.13145/bacdive141018.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Caballeronia
  • species: Caballeronia catudaia
  • full scientific name: Caballeronia catudaia (Peeters et al. 2016) Dobritsa et al. 2017
  • synonyms

    • @ref: 20215
    • synonym: Burkholderia catudaia

@ref: 43568

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Caballeronia

species: Caballeronia catudaia

strain designation: R-50699

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes91.329
6948099.994negative
117218yesnegativerod-shaped

Culture and growth conditions

culture medium

  • @ref: 117218
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 63480
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63480
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no99
69480no99.982

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinentisolation date
63480Rhizosphere soil2013South AfricaZAFAfrica
117218Environment, Rhizosphere soilSouth AfricaZAFAfrica2013-01-02

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host Body-Site#Plant#Rhizosphere
#Host#Plants

Safety information

risk assessment

  • @ref: 117218
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Caballeronia catudaia LMG 29318GCA_001544755contigncbi1777136
66792Burkholderia sp. strain LMG 2931836773.25wgspatric36773
66792Caballeronia catudaia LMG 293182724679461draftimg1777136

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
gram-positiveno98.254no
anaerobicno98.152yes
halophileno94.684no
spore-formingno92.428no
glucose-utilyes88.758no
aerobicyes86.404no
motileyes87.953no
flagellatedno83.327no
thermophileno99.252no
glucose-fermentno89.896no

External links

@ref: 43568

culture collection no.: LMG 29318, CCUG 68411, CIP 111002

straininfo link

  • @ref: 96833
  • straininfo: 412161

literature

  • Pubmed-ID: 27375597
  • title: Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.
  • authors: Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P
  • journal: Front Microbiol
  • DOI: 10.3389/fmicb.2016.00877
  • year: 2016

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43568Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour SamadpourTransfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.10.1099/ijsem.0.002202IJSEM 67: 3846-3853 201728879843
63480Curators of the CCUGhttps://www.ccug.se/strain?id=68411Culture Collection University of Gothenburg (CCUG) (CCUG 68411)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
96833Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID412161.1
117218Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111002Collection of Institut Pasteur (CIP 111002)