Strain identifier
BacDive ID: 141016
Type strain: 
Species: Caballeronia arvi
Strain Designation: R-50208, MAN34
Strain history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-50208 <- W. Draghi, Argentina: strain MAN34
NCBI tax ID(s): 1777135 (species)
version 8.1 (current version)
General
@ref: 43568
BacDive-ID: 141016
keywords: genome sequence, Bacteria, aerobe, mesophilic, motile
description: Caballeronia arvi R-50208 is an aerobe, mesophilic, motile bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 1777135
- Matching level: species
strain history
- @ref: 116515
- history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-50208 <- W. Draghi, Argentina: strain MAN34
doi: 10.13145/bacdive141016.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Caballeronia
- species: Caballeronia arvi
- full scientific name: Caballeronia arvi (Peeters et al. 2016) Dobritsa et al. 2017
synonyms
- @ref: 20215
- synonym: Burkholderia arvi
@ref: 43568
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Caballeronia
species: Caballeronia arvi
strain designation: R-50208, MAN34
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain | cell shape |
|---|---|---|---|---|
| 69480 | yes | 93.148 | ||
| 69480 | 99.987 | negative | ||
| 116515 | no | negative | rod-shaped |
Culture and growth conditions
culture medium
- @ref: 116515
- name: CIP Medium 72
- growth: yes
- link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
culture temp
- @ref: 63481
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 63481
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 98 |
| 69480 | no | 99.972 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | country | origin.country | continent | isolation date |
|---|---|---|---|---|---|---|
| 63481 | Soil | 2010 | Argentina | ARG | Middle and South America | |
| 116515 | Environment, Soil | Argentina | ARG | Middle and South America | 2010-01-04 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 116515
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Caballeronia arvi LMG 29317 | GCA_001544695 | contig | ncbi | 1777135 |
| 66792 | Burkholderia sp. strain LMG 29317 | 36773.24 | wgs | patric | 36773 |
| 66792 | Caballeronia arvi LMG 29317 | 2724679466 | draft | img | 1777135 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 98 | no |
| gram-positive | no | 97.964 | no |
| anaerobic | no | 98.279 | no |
| halophile | no | 94.778 | no |
| spore-forming | no | 92.754 | no |
| glucose-util | yes | 89.274 | no |
| aerobic | yes | 90.022 | no |
| motile | yes | 88.246 | no |
| flagellated | no | 81.688 | no |
| thermophile | no | 99.503 | no |
| glucose-ferment | no | 89.604 | no |
External links
@ref: 43568
culture collection no.: LMG 29317, CCUG 68412, CIP 111001
straininfo link
- @ref: 96831
- straininfo: 410593
literature
- Pubmed-ID: 27375597
- title: Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.
- authors: Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2016.00877
- year: 2016
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 43568 | Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour | Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov. | 10.1099/ijsem.0.002202 | IJSEM 67: 3846-3853 2017 | 28879843 | |
| 63481 | Curators of the CCUG | https://www.ccug.se/strain?id=68412 | Culture Collection University of Gothenburg (CCUG) (CCUG 68412) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 96831 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID410593.1 | |||
| 116515 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111001 | Collection of Institut Pasteur (CIP 111001) |