Strain identifier
BacDive ID: 141015
Type strain: 
Species: Caballeronia arationis
Strain Designation: R-52627
Strain history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-52627
NCBI tax ID(s): 1777142 (species)
version 8.1 (current version)
General
@ref: 43568
BacDive-ID: 141015
keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Caballeronia arationis R-52627 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 1777142
- Matching level: species
strain history
- @ref: 116471
- history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-52627
doi: 10.13145/bacdive141015.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Caballeronia
- species: Caballeronia arationis
- full scientific name: Caballeronia arationis (Peeters et al. 2016) Dobritsa et al. 2017
synonyms
- @ref: 20215
- synonym: Burkholderia arationis
@ref: 43568
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Caballeronia
species: Caballeronia arationis
strain designation: R-52627
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 69480 | negative | 99.956 | ||
| 116471 | negative | rod-shaped | no |
Culture and growth conditions
culture medium
- @ref: 116471
- name: CIP Medium 72
- growth: yes
- link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
culture temp
- @ref: 63474
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 63474
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.996 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | country | origin.country | continent | isolation date |
|---|---|---|---|---|---|---|
| 63474 | Soil | 2014 | Belgium | BEL | Europe | |
| 116471 | Environment, Soil | Belgium | BEL | Europe | 2014-01-02 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 116471
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Caballeronia arationis LMG 29324 | GCA_001544975 | contig | ncbi | 1777142 |
| 66792 | Burkholderia sp. strain LMG 29324 | 36773.30 | wgs | patric | 36773 |
| 66792 | Caballeronia arationis LMG 29324 | 2724679462 | draft | img | 1777142 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.081 | no |
| anaerobic | no | 98.583 | yes |
| halophile | no | 93.655 | no |
| spore-forming | no | 92.553 | no |
| glucose-util | yes | 89.613 | no |
| aerobic | yes | 90.493 | no |
| motile | yes | 81.625 | no |
| flagellated | no | 81.489 | no |
| thermophile | no | 99.495 | yes |
| glucose-ferment | no | 90.437 | no |
External links
@ref: 43568
culture collection no.: CCUG 68405, LMG 29324, CIP 111007
straininfo link
- @ref: 96830
- straininfo: 411367
literature
- Pubmed-ID: 27375597
- title: Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.
- authors: Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2016.00877
- year: 2016
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 43568 | Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour | Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov. | 10.1099/ijsem.0.002202 | IJSEM 67: 3846-3853 2017 | 28879843 | |
| 63474 | Curators of the CCUG | https://www.ccug.se/strain?id=68405 | Culture Collection University of Gothenburg (CCUG) (CCUG 68405) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 96830 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID411367.1 | |||
| 116471 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111007 | Collection of Institut Pasteur (CIP 111007) |