Strain identifier
BacDive ID: 141013
Type strain:
Species: Niallia endozanthoxylica
Strain Designation: 1404
Strain history: <- Li Ma, Yunnan Univ., China
NCBI tax ID(s): 2036016 (species)
General
@ref: 43909
BacDive-ID: 141013
DSM-Number: 100730
keywords: 16S sequence, Bacteria, aerobe, Gram-positive, motile, rod-shaped, colony-forming
description: Niallia endozanthoxylica 1404 is an aerobe, Gram-positive, motile bacterium that forms irregular colonies and was isolated from surface-disinfected inner leaves of Chinese red pepper , Longnan County, Gansu, north-west China.
NCBI tax id
- NCBI tax id: 2036016
- Matching level: species
strain history
- @ref: 67771
- history: <- Li Ma, Yunnan Univ., China
doi: 10.13145/bacdive141013.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Niallia
- species: Niallia endozanthoxylica
- full scientific name: Niallia endozanthoxylica (Ma et al. 2017) Gupta et al. 2020
synonyms
- @ref: 20215
- synonym: Bacillus endozanthoxylicus
@ref: 43909
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Bacillus
species: Bacillus endozanthoxylicus
strain designation: 1404
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement |
---|---|---|---|---|---|---|
43909 | positive | 1.7-3.2 µm | 1.3-1.8 µm | rod-shaped | yes | peritrichous |
67771 | rod-shaped | yes | peritrichous | |||
67771 | positive |
colony morphology
- @ref: 43909
- colony color: pale yellow
- colony shape: irregular
- incubation period: 2 days
- medium used: Nutrient agar
Culture and growth conditions
culture medium
- @ref: 43909
- name: Nutrient agar (NA)
- growth: yes
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43909 | positive | growth | 15-45 | |
43909 | positive | optimum | 32 | mesophilic |
67771 | positive | growth | 32 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
43909 | positive | growth | 6.0-10.0 | alkaliphile |
43909 | positive | optimum | 6.0-7.0 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
43909 | aerobe |
67771 | aerobe |
spore formation
- @ref: 43909
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
43909 | NaCl | positive | growth | 0-5 %(w/v) |
43909 | NaCl | positive | optimum | 0-1 %(w/v) |
observation
@ref | observation |
---|---|
43909 | quinone MK-7 |
67771 | quinones: MK-7 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43909 | 17128 | adipate | - | assimilation |
43909 | 27689 | decanoate | - | assimilation |
43909 | 16467 | L-arginine | - | assimilation |
43909 | 16828 | L-tryptophan | - | assimilation |
43909 | 18333 | D-arabitol | - | builds acid from |
43909 | 62318 | D-lyxose | - | builds acid from |
43909 | 18403 | L-arabitol | - | builds acid from |
43909 | 26546 | rhamnose | - | builds acid from |
43909 | 27922 | sorbose | - | builds acid from |
43909 | 17151 | xylitol | - | builds acid from |
43909 | 18222 | xylose | - | builds acid from |
43909 | 16651 | (S)-lactate | - | carbon source |
43909 | 18024 | D-galacturonic acid | - | carbon source |
43909 | 8391 | D-gluconate | - | carbon source |
43909 | 14314 | D-glucose 6-phosphate | - | carbon source |
43909 | 16899 | D-mannitol | - | carbon source |
43909 | 5291 | gelatin | - | carbon source |
43909 | 28066 | gentiobiose | - | carbon source |
43909 | 29991 | L-aspartate | - | carbon source |
43909 | 320055 | methyl beta-D-glucopyranoside | - | carbon source |
43909 | 32528 | turanose | - | carbon source |
43909 | 53423 | tween 40 | - | carbon source |
43909 | 16199 | urea | - | hydrolysis |
43909 | 27613 | amygdalin | + | builds acid from |
43909 | 18305 | arbutin | + | builds acid from |
43909 | 17057 | cellobiose | + | builds acid from |
43909 | 17924 | D-sorbitol | + | builds acid from |
43909 | 16443 | D-tagatose | + | builds acid from |
43909 | 65327 | D-xylose | + | builds acid from |
43909 | 4853 | esculin | + | builds acid from |
43909 | 28757 | fructose | + | builds acid from |
43909 | 28260 | galactose | + | builds acid from |
43909 | 28066 | gentiobiose | + | builds acid from |
43909 | 17234 | glucose | + | builds acid from |
43909 | 17754 | glycerol | + | builds acid from |
43909 | 28087 | glycogen | + | builds acid from |
43909 | 17268 | myo-inositol | + | builds acid from |
43909 | 15443 | inulin | + | builds acid from |
43909 | 30849 | L-arabinose | + | builds acid from |
43909 | 17716 | lactose | + | builds acid from |
43909 | 17306 | maltose | + | builds acid from |
43909 | 29864 | mannitol | + | builds acid from |
43909 | 37684 | mannose | + | builds acid from |
43909 | 6731 | melezitose | + | builds acid from |
43909 | 28053 | melibiose | + | builds acid from |
43909 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
43909 | 43943 | methyl alpha-D-mannoside | + | builds acid from |
43909 | 506227 | N-acetylglucosamine | + | builds acid from |
43909 | 18401 | phenylacetate | + | builds acid from |
43909 | 32032 | potassium gluconate | + | builds acid from |
43909 | 63043 | potassium nitrate | + | builds acid from |
43909 | 16634 | raffinose | + | builds acid from |
43909 | 33942 | ribose | + | builds acid from |
43909 | 17814 | salicin | + | builds acid from |
43909 | 28017 | starch | + | builds acid from |
43909 | 17992 | sucrose | + | builds acid from |
43909 | 27082 | trehalose | + | builds acid from |
43909 | 32528 | turanose | + | builds acid from |
43909 | 15588 | D-malate | + | carbon source |
43909 | 15589 | L-malate | + | carbon source |
43909 | 16763 | 2-oxobutanoate | + | carbon source |
43909 | 73918 | 3-O-methyl-D-glucose | + | carbon source |
43909 | 30089 | acetate | + | carbon source |
43909 | 13705 | acetoacetate | + | carbon source |
43909 | 15347 | acetone | + | carbon source |
43909 | 64552 | 2-hydroxybutyrate | + | carbon source |
43909 | 8295 | beta-hydroxybutyrate | + | carbon source |
43909 | 73706 | bromosuccinate | + | carbon source |
43909 | 17057 | cellobiose | + | carbon source |
43909 | 16947 | citrate | + | carbon source |
43909 | 29990 | D-aspartate | + | carbon source |
43909 | 78697 | D-fructose 6-phosphate | + | carbon source |
43909 | 28847 | D-fucose | + | carbon source |
43909 | 12936 | D-galactose | + | carbon source |
43909 | 15748 | D-glucuronate | + | carbon source |
43909 | 33801 | D-saccharate | + | carbon source |
43909 | 16523 | D-serine | + | carbon source |
43909 | 15740 | formate | + | carbon source |
43909 | 16537 | galactarate | + | carbon source |
43909 | 16865 | gamma-aminobutyric acid | + | carbon source |
43909 | 495056 | gamma-cyclodextrin | + | carbon source |
43909 | 32323 | glucuronamide | + | carbon source |
43909 | 17754 | glycerol | + | carbon source |
43909 | 70744 | glycine-proline | + | carbon source |
43909 | 17596 | inosine | + | carbon source |
43909 | 18287 | L-fucose | + | carbon source |
43909 | 53071 | L-galactonate | + | carbon source |
43909 | 29985 | L-glutamate | + | carbon source |
43909 | 15971 | L-histidine | + | carbon source |
43909 | 18183 | L-pyroglutamic acid | + | carbon source |
43909 | 62345 | L-rhamnose | + | carbon source |
43909 | 17115 | L-serine | + | carbon source |
43909 | 17716 | lactose | + | carbon source |
43909 | maltose hydrate | + | carbon source | |
43909 | 74611 | methyl (R)-lactate | + | carbon source |
43909 | 51850 | methyl pyruvate | + | carbon source |
43909 | 17268 | myo-inositol | + | carbon source |
43909 | 63153 | N-acetyl-D-mannosamine | + | carbon source |
43909 | 506227 | N-acetylglucosamine | + | carbon source |
43909 | 35418 | n-acetylneuraminate | + | carbon source |
43909 | 17272 | propionate | + | carbon source |
43909 | 26490 | quinate | + | carbon source |
43909 | 16634 | raffinose | + | carbon source |
43909 | 17814 | salicin | + | carbon source |
43909 | 17164 | stachyose | + | carbon source |
43909 | 27082 | trehalose | + | carbon source |
43909 | 17634 | D-glucose | + | fermentation |
43909 | 5291 | gelatin | + | hydrolysis |
43909 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
43909 | alkaline phosphatase | + | 3.1.3.1 |
43909 | esterase (C 4) | + | |
43909 | esterase Lipase (C 8) | + | |
43909 | leucine arylamidase | + | 3.4.11.1 |
43909 | valine arylamidase | + | |
43909 | cystine arylamidase | + | 3.4.11.3 |
43909 | alpha-chymotrypsin | + | 3.4.21.1 |
43909 | acid phosphatase | + | 3.1.3.2 |
43909 | naphthol-AS-BI-phosphohydrolase | + | |
43909 | alpha-galactosidase | + | 3.2.1.22 |
43909 | beta-galactosidase | + | 3.2.1.23 |
43909 | alpha-glucosidase | + | 3.2.1.20 |
43909 | beta-glucosidase | + | 3.2.1.21 |
43909 | lipase (C 14) | - | |
43909 | trypsin | - | 3.4.21.4 |
43909 | beta-glucuronidase | - | 3.2.1.31 |
43909 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
43909 | alpha-mannosidase | - | 3.2.1.24 |
43909 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage 43909 C15:0 anteiso 18.4 43909 C17:0 anteiso 2.6 43909 C14:0 1.2 43909 C15:0 3OH 1.4 43909 C16:0 5.5 43909 C16:1ω11c 9 43909 C16:1ω7c alcohol 4.3 43909 C18:0 1.4 43909 C18:1ω7c / C18:1ω6c 1.3 43909 C18:1ω9c 1.1 43909 C19:1ω8c cyclo 2.4 43909 C14:0 iso 12.1 43909 C15:0 iso 25.6 43909 C16:0 iso 6 43909 C17:0 iso 1.4 43909 iso-C17:1 I / anteiso C17:1 B 1.4 43909 C17:1 iso ω10c 1.5 - type of FA analysis: whole cell analysis
- incubation medium: Tryptic soy agar
- agar/liquid: agar
- incubation temperature: 28
- incubation time: 4
- software version: Sherlock 6.1
- library/peak naming table: TSBA6
- system: MIS MIDI
- method/protocol: Sasser, 1990
- cutoff value:
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | enrichment culture | enrichment culture temperature |
---|---|---|---|---|---|---|---|
43909 | surface-disinfected inner leaves of Chinese red pepper (Huajiao) (Zanthoxylum bungeanum Maxim), Longnan County, Gansu, north-west China | Longnan County, Gansu | China | CHN | Asia | Nutrient agar | 32 |
67771 | From pepper, leaf tissue of `Zanthoxylum bungeanum` Maxim collected from Longnan country | Gansu province | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Shrub (Scrub) |
#Host Body-Site | #Plant | #Leaf (Phyllosphere) |
#Host Body-Site | #Plant | #Sterilized plant part |
Sequence information
16S sequences
- @ref: 43909
- description: 16S rRNA gene sequence
- accession: KX865139
- database: nuccore
GC content
@ref | GC-content | method |
---|---|---|
43909 | 39.4 | high performance liquid chromatography (HPLC) |
67771 | 39.4 |
External links
@ref: 43909
culture collection no.: CCTCC AB 2017021, KCTC 33827, DSM 100730
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
43909 | Li Ma, Jia-Qin Xi, Yong-Hong Cao, Xiao-Yan Wang, Shuai-Chao Zheng, Cheng-Gang Yang, Ling-ling Yang, Qi-Li Mi, Xue-Mei Li, Ming-Liang Zhu, Ming-He Mo | Bacillus endozanthoxylicus sp. nov., an endophytic bacterium isolated from Zanthoxylum bungeanum Maxim leaves | 10.1099/ijsem.0.002138 | IJSEM 67: 3699-3705 2017 | 28879837 |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc |