Strain identifier

BacDive ID: 141013

Type strain: Yes

Species: Niallia endozanthoxylica

Strain Designation: 1404

Strain history: <- Li Ma, Yunnan Univ., China

NCBI tax ID(s): 2036016 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43909

BacDive-ID: 141013

DSM-Number: 100730

keywords: 16S sequence, Bacteria, aerobe, Gram-positive, motile, rod-shaped, colony-forming

description: Niallia endozanthoxylica 1404 is an aerobe, Gram-positive, motile bacterium that forms irregular colonies and was isolated from surface-disinfected inner leaves of Chinese red pepper , Longnan County, Gansu, north-west China.

NCBI tax id

  • NCBI tax id: 2036016
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Li Ma, Yunnan Univ., China

doi: 10.13145/bacdive141013.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Niallia
  • species: Niallia endozanthoxylica
  • full scientific name: Niallia endozanthoxylica (Ma et al. 2017) Gupta et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Bacillus endozanthoxylicus

@ref: 43909

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Bacillus

species: Bacillus endozanthoxylicus

strain designation: 1404

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
43909positive1.7-3.2 µm1.3-1.8 µmrod-shapedyesperitrichous
67771rod-shapedyesperitrichous
67771positive

colony morphology

  • @ref: 43909
  • colony color: pale yellow
  • colony shape: irregular
  • incubation period: 2 days
  • medium used: Nutrient agar

Culture and growth conditions

culture medium

  • @ref: 43909
  • name: Nutrient agar (NA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43909positivegrowth15-45
43909positiveoptimum32mesophilic
67771positivegrowth32mesophilic

culture pH

@refabilitytypepHPH range
43909positivegrowth6.0-10.0alkaliphile
43909positiveoptimum6.0-7.0

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43909aerobe
67771aerobe

spore formation

  • @ref: 43909
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43909NaClpositivegrowth0-5 %(w/v)
43909NaClpositiveoptimum0-1 %(w/v)

observation

@refobservation
43909quinone MK-7
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4390917128adipate-assimilation
4390927689decanoate-assimilation
4390916467L-arginine-assimilation
4390916828L-tryptophan-assimilation
4390918333D-arabitol-builds acid from
4390962318D-lyxose-builds acid from
4390918403L-arabitol-builds acid from
4390926546rhamnose-builds acid from
4390927922sorbose-builds acid from
4390917151xylitol-builds acid from
4390918222xylose-builds acid from
4390916651(S)-lactate-carbon source
4390918024D-galacturonic acid-carbon source
439098391D-gluconate-carbon source
4390914314D-glucose 6-phosphate-carbon source
4390916899D-mannitol-carbon source
439095291gelatin-carbon source
4390928066gentiobiose-carbon source
4390929991L-aspartate-carbon source
43909320055methyl beta-D-glucopyranoside-carbon source
4390932528turanose-carbon source
4390953423tween 40-carbon source
4390916199urea-hydrolysis
4390927613amygdalin+builds acid from
4390918305arbutin+builds acid from
4390917057cellobiose+builds acid from
4390917924D-sorbitol+builds acid from
4390916443D-tagatose+builds acid from
4390965327D-xylose+builds acid from
439094853esculin+builds acid from
4390928757fructose+builds acid from
4390928260galactose+builds acid from
4390928066gentiobiose+builds acid from
4390917234glucose+builds acid from
4390917754glycerol+builds acid from
4390928087glycogen+builds acid from
4390917268myo-inositol+builds acid from
4390915443inulin+builds acid from
4390930849L-arabinose+builds acid from
4390917716lactose+builds acid from
4390917306maltose+builds acid from
4390929864mannitol+builds acid from
4390937684mannose+builds acid from
439096731melezitose+builds acid from
4390928053melibiose+builds acid from
43909320061methyl alpha-D-glucopyranoside+builds acid from
4390943943methyl alpha-D-mannoside+builds acid from
43909506227N-acetylglucosamine+builds acid from
4390918401phenylacetate+builds acid from
4390932032potassium gluconate+builds acid from
4390963043potassium nitrate+builds acid from
4390916634raffinose+builds acid from
4390933942ribose+builds acid from
4390917814salicin+builds acid from
4390928017starch+builds acid from
4390917992sucrose+builds acid from
4390927082trehalose+builds acid from
4390932528turanose+builds acid from
4390915588D-malate+carbon source
4390915589L-malate+carbon source
43909167632-oxobutanoate+carbon source
43909739183-O-methyl-D-glucose+carbon source
4390930089acetate+carbon source
4390913705acetoacetate+carbon source
4390915347acetone+carbon source
43909645522-hydroxybutyrate+carbon source
439098295beta-hydroxybutyrate+carbon source
4390973706bromosuccinate+carbon source
4390917057cellobiose+carbon source
4390916947citrate+carbon source
4390929990D-aspartate+carbon source
4390978697D-fructose 6-phosphate+carbon source
4390928847D-fucose+carbon source
4390912936D-galactose+carbon source
4390915748D-glucuronate+carbon source
4390933801D-saccharate+carbon source
4390916523D-serine+carbon source
4390915740formate+carbon source
4390916537galactarate+carbon source
4390916865gamma-aminobutyric acid+carbon source
43909495056gamma-cyclodextrin+carbon source
4390932323glucuronamide+carbon source
4390917754glycerol+carbon source
4390970744glycine-proline+carbon source
4390917596inosine+carbon source
4390918287L-fucose+carbon source
4390953071L-galactonate+carbon source
4390929985L-glutamate+carbon source
4390915971L-histidine+carbon source
4390918183L-pyroglutamic acid+carbon source
4390962345L-rhamnose+carbon source
4390917115L-serine+carbon source
4390917716lactose+carbon source
43909maltose hydrate+carbon source
4390974611methyl (R)-lactate+carbon source
4390951850methyl pyruvate+carbon source
4390917268myo-inositol+carbon source
4390963153N-acetyl-D-mannosamine+carbon source
43909506227N-acetylglucosamine+carbon source
4390935418n-acetylneuraminate+carbon source
4390917272propionate+carbon source
4390926490quinate+carbon source
4390916634raffinose+carbon source
4390917814salicin+carbon source
4390917164stachyose+carbon source
4390927082trehalose+carbon source
4390917634D-glucose+fermentation
439095291gelatin+hydrolysis
4390917632nitrate+reduction

enzymes

@refvalueactivityec
43909alkaline phosphatase+3.1.3.1
43909esterase (C 4)+
43909esterase Lipase (C 8)+
43909leucine arylamidase+3.4.11.1
43909valine arylamidase+
43909cystine arylamidase+3.4.11.3
43909alpha-chymotrypsin+3.4.21.1
43909acid phosphatase+3.1.3.2
43909naphthol-AS-BI-phosphohydrolase+
43909alpha-galactosidase+3.2.1.22
43909beta-galactosidase+3.2.1.23
43909alpha-glucosidase+3.2.1.20
43909beta-glucosidase+3.2.1.21
43909lipase (C 14)-
43909trypsin-3.4.21.4
43909beta-glucuronidase-3.2.1.31
43909N-acetyl-beta-glucosaminidase-3.2.1.52
43909alpha-mannosidase-3.2.1.24
43909alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43909C15:0 anteiso18.4
    43909C17:0 anteiso2.6
    43909C14:01.2
    43909C15:0 3OH1.4
    43909C16:05.5
    43909C16:1ω11c9
    43909C16:1ω7c alcohol4.3
    43909C18:01.4
    43909C18:1ω7c / C18:1ω6c1.3
    43909C18:1ω9c1.1
    43909C19:1ω8c cyclo2.4
    43909C14:0 iso12.1
    43909C15:0 iso25.6
    43909C16:0 iso6
    43909C17:0 iso1.4
    43909iso-C17:1 I / anteiso C17:1 B1.4
    43909C17:1 iso ω10c1.5
  • type of FA analysis: whole cell analysis
  • incubation medium: Tryptic soy agar
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 4
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture temperature
43909surface-disinfected inner leaves of Chinese red pepper (Huajiao) (Zanthoxylum bungeanum Maxim), Longnan County, Gansu, north-west ChinaLongnan County, GansuChinaCHNAsiaNutrient agar32
67771From pepper, leaf tissue of `Zanthoxylum bungeanum` Maxim collected from Longnan countryGansu provinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Leaf (Phyllosphere)
#Host Body-Site#Plant#Sterilized plant part

Sequence information

16S sequences

  • @ref: 43909
  • description: 16S rRNA gene sequence
  • accession: KX865139
  • database: nuccore

GC content

@refGC-contentmethod
4390939.4high performance liquid chromatography (HPLC)
6777139.4

External links

@ref: 43909

culture collection no.: CCTCC AB 2017021, KCTC 33827, DSM 100730

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43909Li Ma, Jia-Qin Xi, Yong-Hong Cao, Xiao-Yan Wang, Shuai-Chao Zheng, Cheng-Gang Yang, Ling-ling Yang, Qi-Li Mi, Xue-Mei Li, Ming-Liang Zhu, Ming-He MoBacillus endozanthoxylicus sp. nov., an endophytic bacterium isolated from Zanthoxylum bungeanum Maxim leaves10.1099/ijsem.0.002138IJSEM 67: 3699-3705 201728879837
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc