Strain identifier

BacDive ID: 140975

Type strain: Yes

Species: Massilia solisilvae

Strain Designation: J18

Strain history: J. Kim; Kyonggi Univ., South Korea; J18.

NCBI tax ID(s): 1811225 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43867

BacDive-ID: 140975

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Massilia solisilvae J18 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from forest soil at Kyonggi University, Suwon, Gyeonggi-Do, South Korea.

NCBI tax id

  • NCBI tax id: 1811225
  • Matching level: species

strain history

  • @ref: 67770
  • history: J. Kim; Kyonggi Univ., South Korea; J18.

doi: 10.13145/bacdive140975.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Massilia
  • species: Massilia solisilvae
  • full scientific name: Massilia solisilvae Altankhuu and Kim 2017
  • synonyms

    • @ref: 20215
    • synonym: Telluria solisilvae

@ref: 43867

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Massilia

species: Massilia solisilvae

strain designation: J18

type strain: yes

Morphology

cell morphology

  • @ref: 43867
  • gram stain: negative
  • cell length: 2.1-2.3 µm
  • cell width: 0.4-0.5 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: polar

colony morphology

  • @ref: 43867
  • colony size: 0.5-0.8 mm
  • colony color: white
  • colony shape: circular
  • incubation period: 2 days
  • medium used: R2A agar

Culture and growth conditions

culture medium

@refnamegrowth
43867Brain-Heart infusion agarno
43867LB (Luria-Bertani) MEDIUMyes
43867Marine agar (MA)no
43867Nutrient agar (NA)yes
43867Reasoner's 2A agar (R2A)yes
43867Tryptic soy agarno

culture temp

@refgrowthtypetemperaturerange
43867positivegrowth4-45
43867positiveoptimum28-37mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
43867positivegrowth4.0-10.0alkaliphile
43867positiveoptimum6.0-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 43867
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43867
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43867NaClpositiveoptimum0 %(w/v)
43867NaClpositivegrowth0-1 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43867370543-hydroxybutyrate-assimilation
43867178794-hydroxybenzoate-assimilation
438673557154-nitrophenyl beta-D-galactopyranoside-assimilation
4386717634D-glucose-assimilation
4386716024D-mannose-assimilation
4386717203L-proline-assimilation
4386717115L-serine-assimilation
4386724996lactate-assimilation
4386725115malate-assimilation
4386718401phenylacetate-assimilation
4386732032potassium gluconate-assimilation
4386753258sodium citrate-assimilation
438679300suberic acid-assimilation
4386717992sucrose-assimilation
4386731011valerate-assimilation
4386727897tryptophan-energy source
43867casein-hydrolysis
438675291gelatin-hydrolysis
4386728017starch-hydrolysis
4386716199urea-hydrolysis
4386717128adipate+assimilation
4386728087glycogen+assimilation
4386716991dna+hydrolysis
438674853esculin+hydrolysis
4386753423tween 40+hydrolysis
4386753425tween 60+hydrolysis
4386753426tween 80+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
4386716136hydrogen sulfideno
4386735581indoleno

metabolite tests

  • @ref: 43867
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
43867catalase+1.11.1.6
43867cytochrome oxidase+1.9.3.1
43867tryptophan deaminase-4.1.99.1
43867cystine arylamidase+3.4.11.3
43867alpha-glucosidase+3.2.1.20
43867alpha-chymotrypsin-3.4.21.1
43867beta-galactosidase-3.2.1.23
43867beta-glucosidase-3.2.1.21
43867N-acetyl-beta-glucosaminidase-3.2.1.52
43867alpha-fucosidase-3.2.1.51

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture durationenrichment culture temperature
43867forest soil at Kyonggi University, Suwon, Gyeonggi-Do, South KoreaSuwon, Gyeonggi-DoRepublic of KoreaKORAsiaSoil extract-R2A agar5 weeks20
67770Forest soil at Kyonggi Univ.Republic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

Sequence information

16S sequences

  • @ref: 43867
  • description: 16S rRNA gene sequence
  • accession: KU870758
  • database: nuccore

Genome sequences

  • @ref: 66792
  • description: Massilia solisilvae JCM 31607
  • accession: GCA_024753215
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1811225

GC content

  • @ref: 67770
  • GC-content: 63.4
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes87.938no
flagellatedyes80.755yes
gram-positiveno98.885no
anaerobicno98.703yes
aerobicyes85.466yes
halophileno93.889yes
spore-formingno93.173no
glucose-fermentno89.447no
thermophileno97.525yes
glucose-utilno62.918yes

External links

@ref: 43867

culture collection no.: KEMB 9005-366, JCM 31607

literature

  • topic: Phylogeny
  • Pubmed-ID: 28820094
  • title: Massilia solisilvae sp. nov., Massilia terrae sp. nov. and Massilia agilis sp. nov., isolated from forest soil in South Korea by using a newly developed culture method.
  • authors: Altankhuu K, Kim J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002076
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Nucleic Acid Hybridization, Oxalobacteraceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Putrescine/chemistry, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43867Khulan Altankhuu, Jaisoo KimMassilia solisilvae sp. nov., Massilia terrae sp. nov. and Massilia agilis sp. nov., isolated from forest soil in South Korea by using a newly developed culture method10.1099/ijsem.0.002076IJSEM 67: 3026-3032 201728820094
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/