Strain identifier

BacDive ID: 140963

Type strain: Yes

Species: Bacillus albus

Strain Designation: N35-10-2

Strain history: CIP <- 2017, LMG <- 2015, L. Yang, Third Inst. of Ocean., Fujian Province, Xiamen, China: strain N35-10-2 <- Z. Liu

NCBI tax ID(s): 2026189 (species)

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General

@ref: 43860

BacDive-ID: 140963

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, Gram-positive, rod-shaped, colony-forming

description: Bacillus albus N35-10-2 is a facultative anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from sediment of the South China Sea.

NCBI tax id

  • NCBI tax id: 2026189
  • Matching level: species

strain history

@refhistory
67771<- Yang Liu, The Third Institute of State Oceanic Administration(SOA)
116198CIP <- 2017, LMG <- 2015, L. Yang, Third Inst. of Ocean., Fujian Province, Xiamen, China: strain N35-10-2 <- Z. Liu

doi: 10.13145/bacdive140963.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus albus
  • full scientific name: Bacillus albus Liu et al. 2017

@ref: 43860

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Bacillus

species: Bacillus albus

strain designation: N35-10-2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
43860positive2.8-3.2 µm1.3-1.5 µmrod-shapedno
67771positive
116198positiverod-shapedno

colony morphology

  • @ref: 43860
  • colony size: 2-3 mm
  • colony color: white
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Luria-Bertani agar

Culture and growth conditions

culture medium

@refnamegrowthlink
43860LB (Luria-Bertani) MEDIUMyes
43860Trypticase soy agaryes
116198CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
43860positivegrowth15-40
43860positiveoptimum30mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43860positivegrowth5.0-10.0alkaliphile
43860positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43860facultative anaerobe
67771aerobe

spore formation

  • @ref: 43860
  • spore description: central elliptical endospore
  • type of spore: endospore
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
43860NaClpositivegrowth0-9 %(w/v)
43860NaClpositiveoptimum0.5-1 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43860168082-dehydro-D-gluconate-builds acid from
43860581435-dehydro-D-gluconate-builds acid from
4386027613amygdalin-builds acid from
4386022599arabinose-builds acid from
4386015963ribitol-builds acid from
4386017108D-arabinose-builds acid from
4386018333D-arabitol-builds acid from
4386028847D-fucose-builds acid from
4386012936D-galactose-builds acid from
4386062318D-lyxose-builds acid from
4386016899D-mannitol-builds acid from
4386016024D-mannose-builds acid from
4386017924D-sorbitol-builds acid from
4386016443D-tagatose-builds acid from
4386065327D-xylose-builds acid from
4386016813galactitol-builds acid from
4386017113erythritol-builds acid from
4386028066gentiobiose-builds acid from
4386017234glucose-builds acid from
4386017754glycerol-builds acid from
4386017268myo-inositol-builds acid from
4386015443inulin-builds acid from
4386030849L-arabinose-builds acid from
4386018403L-arabitol-builds acid from
4386018287L-fucose-builds acid from
4386062345L-rhamnose-builds acid from
4386017266L-sorbose-builds acid from
4386065328L-xylose-builds acid from
4386017716lactose-builds acid from
4386029864mannitol-builds acid from
438606731melezitose-builds acid from
4386028053melibiose-builds acid from
43860320061methyl alpha-D-glucopyranoside-builds acid from
4386043943methyl alpha-D-mannoside-builds acid from
4386074863methyl beta-D-xylopyranoside-builds acid from
4386032032potassium gluconate-builds acid from
4386016634raffinose-builds acid from
4386026546rhamnose-builds acid from
4386030911sorbitol-builds acid from
4386017992sucrose-builds acid from
4386032528turanose-builds acid from
4386017151xylitol-builds acid from
4386018305arbutin+builds acid from
4386017057cellobiose+builds acid from
4386015824D-fructose+builds acid from
4386017634D-glucose+builds acid from
4386016988D-ribose+builds acid from
43860esculin ferric citrate+builds acid from
4386028087glycogen+builds acid from
4386017306maltose+builds acid from
43860506227N-acetylglucosamine+builds acid from
4386017814salicin+builds acid from
4386028017starch+builds acid from
4386017992sucrose+builds acid from
4386027082trehalose+builds acid from
4386016947citrate+carbon source
43860casein+hydrolysis
43860skimmed milk+hydrolysis
4386028017starch+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
4386016136hydrogen sulfideno
4386035581indoleno
4386015688acetoinyes

metabolite tests

  • @ref: 43860
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
43860catalase+1.11.1.6
43860cytochrome oxidase+1.9.3.1
43860arginine dihydrolase+3.5.3.6
43860gelatinase+
43860beta-galactosidase-3.2.1.23
43860lysine decarboxylase-4.1.1.18
43860ornithine decarboxylase-4.1.1.17
43860urease-3.5.1.5
43860tryptophan deaminase-4.1.99.1

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43860C13:0 anteiso1.3
    43860C15:0 anteiso4.4
    43860C17:0 anteiso1.6
    43860C12:02.7
    43860C14:07.9
    43860C16:016.4
    43860C16:1ω11c1.2
    43860C16:1ω7c / C15:0 iso 2OH10.3
    43860C18:06.1
    43860C18:1ω9c2
    43860C12:0 iso1.3
    43860C13:0 iso6.9
    43860C14:0 iso4.2
    43860C15:0 iso1
    43860C15:1 iso G1.2
    43860C16:0 iso4.6
    43860C17:0 iso3.8
    43860C17:1 iso I /C17:1 anteiso B7.9
    43860C17:1 iso ω5c1.3
  • type of FA analysis: whole cell analysis
  • incubation medium: Tripticase soy agar
  • agar/liquid: agar
  • incubation temperature: 28
  • software version: Sherlock 6.0B
  • library/peak naming table: TSBA 6.0
  • system: MIS MIDI
  • instrument: Agilent 6850 gas chromatograph
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
43860sediment of the South China Sea
67771From sedimentsthe South China SeaChinaCHNAsia
116198Environment, SedimentsChina SeaChinaCHNAsia2006-01-02

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_26.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_21;97_22;98_25;99_26&stattab=map
  • Last taxonomy: Bacillus
  • 16S sequence: KJ812440
  • Sequence Identity:
  • Total samples: 4969
  • soil counts: 1920
  • aquatic counts: 446
  • animal counts: 1524
  • plant counts: 1079

Safety information

risk assessment

  • @ref: 116198
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 43860
  • description: 16S rRNA gene sequence
  • accession: KJ812440
  • database: nuccore

Genome sequences

  • @ref: 66792
  • description: Bacillus albus N35-10-2
  • accession: GCA_001884185
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2026189

GC content

  • @ref: 43860
  • GC-content: 35
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes73.358no
gram-positiveyes88.744no
anaerobicno97.944yes
aerobicyes75.14no
halophileno93.846yes
spore-formingyes93.278yes
glucose-utilyes90.759no
thermophileno99.59yes
motileyes62.013yes
glucose-fermentno90.712no

External links

@ref: 43860

culture collection no.: MCCC 1A02146, KCTC 33710, LMG 28875, NBRC 113917, CIP 111456

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28792367Proposal of nine novel species of the Bacillus cereus group.Liu Y, Du J, Lai Q, Zeng R, Ye D, Xu J, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0018212017Bacillus/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny32155116Bacillus fungorum sp. nov., a bacterium isolated from spent mushroom substrate.Liu X, Wang L, Han M, Xue QH, Zhang GS, Gao J, Sun XInt J Syst Evol Microbiol10.1099/ijsem.0.0036732020*Agaricales, Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43860Yang Liu, Juan Du, Qiliang Lai, Runying Zeng, Dezan Ye, Jun Xu, Zongze ShaoProposal of nine novel species of the Bacillus cereus group10.1099/ijsem.0.001821IJSEM 67: 2499-2508 201728792367
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
116198Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111456Collection of Institut Pasteur (CIP 111456)