Strain identifier

BacDive ID: 140957

Type strain: Yes

Species: Flaviaestuariibacter terrae

Strain Designation: HY03

Strain history: <- Jung Hee-Young, Kyungpook National Univ.

NCBI tax ID(s): 1892555 (species)

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General

@ref: 43857

BacDive-ID: 140957

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Flaviaestuariibacter terrae HY03 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from mountain soil collected in Chungju-si, Chungcheongbuk-do, South Korea.

NCBI tax id

  • NCBI tax id: 1892555
  • Matching level: species

strain history

@refhistory
67770H.-Y. Jung; Kyungpook Natl. Univ., South Korea; HY03.
67771<- Jung Hee-Young, Kyungpook National Univ.

doi: 10.13145/bacdive140957.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Flaviaestuariibacter
  • species: Flaviaestuariibacter terrae
  • full scientific name: Flaviaestuariibacter terrae corrig. Okiria et al. 2017

  • synonyms

    • @ref: 20215
    • synonym: Flaviaesturariibacter terrae

@ref: 43857

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Chitinophagales

family: Chitinophagaceae

genus: Flaviaesturariibacter

species: Flaviaesturariibacter terrae

strain designation: HY03

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
43857negative5.1-12.5 µm0.9-1.2 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 43857
  • colony size: 1-2 mm
  • colony color: pale yellow
  • colony shape: circular
  • incubation period: 3 days
  • medium used: R2A agar

Culture and growth conditions

culture medium

@refnamegrowth
43857LB (Luria-Bertani) MEDIUMno
43857Nutrient agar (NA)no
43857Reasoner's 2A agar (R2A)yes
43857Tryptic soy agarno

culture temp

@refgrowthtypetemperaturerange
43857positivegrowth10-37
43857positiveoptimum25mesophilic
67770positivegrowth25mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
43857positivegrowth7.0-8.0
43857positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43857aerobe
67771aerobe

halophily

  • @ref: 43857
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 0.5 %(w/v)

observation

@refobservation
43857quinone MK-7
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43857168082-dehydro-D-gluconate-assimilation
43857161933-hydroxybenzoate-assimilation
43857178794-hydroxybenzoate-assimilation
43857581435-dehydro-D-gluconate-assimilation
4385716411acetic acid-assimilation
4385727689decanoate-assimilation
4385716947citrate-assimilation
4385717634D-glucose-assimilation
4385716899D-mannitol-assimilation
4385716988D-ribose-assimilation
4385717924D-sorbitol-assimilation
43857370543-hydroxybutyrate-assimilation
4385724996lactate-assimilation
4385728087glycogen-assimilation
4385717240itaconate-assimilation
43857L-alanine 4-nitroanilide-assimilation
4385730849L-arabinose-assimilation
4385718287L-fucose-assimilation
4385715971L-histidine-assimilation
4385717203L-proline-assimilation
4385762345L-rhamnose-assimilation
4385717115L-serine-assimilation
43857maltose hydrate-assimilation
4385728053melibiose-assimilation
4385717268myo-inositol-assimilation
43857506227N-acetylglucosamine-assimilation
4385717272propionate-assimilation
4385717814salicin-assimilation
4385762983sodium malonate-assimilation
438579300suberic acid-assimilation
4385717992sucrose-assimilation
4385731011valerate-assimilation
43857168082-dehydro-D-gluconate-builds acid from
438573-O-methyl alpha-D-glucopyranoside-builds acid from
4385727613amygdalin-builds acid from
4385718305arbutin-builds acid from
4385717057cellobiose-builds acid from
4385715963ribitol-builds acid from
4385717108D-arabinose-builds acid from
4385718333D-arabitol-builds acid from
4385715824D-fructose-builds acid from
4385728847D-fucose-builds acid from
4385712936D-galactose-builds acid from
4385762318D-lyxose-builds acid from
4385716024D-mannose-builds acid from
4385716443D-tagatose-builds acid from
4385765327D-xylose-builds acid from
4385716813galactitol-builds acid from
4385717113erythritol-builds acid from
4385728066gentiobiose-builds acid from
4385724265gluconate-builds acid from
4385717234glucose-builds acid from
4385717754glycerol-builds acid from
4385728087glycogen-builds acid from
4385717268myo-inositol-builds acid from
4385715443inulin-builds acid from
4385730849L-arabinose-builds acid from
4385718403L-arabitol-builds acid from
4385718287L-fucose-builds acid from
4385762345L-rhamnose-builds acid from
4385717266L-sorbose-builds acid from
4385765328L-xylose-builds acid from
4385717716lactose-builds acid from
43857maltose hydrate-builds acid from
4385729864mannitol-builds acid from
438576731melezitose-builds acid from
4385728053melibiose-builds acid from
4385774863methyl beta-D-xylopyranoside-builds acid from
43857506227N-acetylglucosamine-builds acid from
4385716634raffinose-builds acid from
4385733942ribose-builds acid from
4385717814salicin-builds acid from
4385730911sorbitol-builds acid from
4385728017starch-builds acid from
4385717992sucrose-builds acid from
4385727082trehalose-builds acid from
4385732528turanose-builds acid from
4385717151xylitol-builds acid from
438574853esculin-hydrolysis
438575291gelatin-hydrolysis
4385717632nitrate-reduction
43857581435-dehydro-D-gluconate+builds acid from
438574853esculin+builds acid from

metabolite production

  • @ref: 43857
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43857cytochrome oxidase+1.9.3.1
43857catalase+1.11.1.6
43857N-acetyl-beta-glucosaminidase+3.2.1.52
43857acid phosphatase+3.1.3.2
43857alkaline phosphatase+3.1.3.1
43857alpha-chymotrypsin+3.4.21.1
43857alpha-galactosidase+3.2.1.22
43857beta-galactosidase+3.2.1.23
43857alpha-glucosidase+3.2.1.20
43857beta-glucosidase+3.2.1.21
43857leucine arylamidase+3.4.11.1
43857alpha-mannosidase+3.2.1.24
43857trypsin+3.4.21.4
43857cystine arylamidase+/-3.4.11.3
43857esterase Lipase (C 8)+/-
43857lipase (C 14)+/-
43857naphthol-AS-BI-phosphohydrolase+/-
43857valine arylamidase+/-
43857arginine dihydrolase-3.5.3.6
43857esterase (C 4)-
43857alpha-fucosidase-3.2.1.51
43857beta-glucuronidase-3.2.1.31
43857urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43857C15:0 anteiso5.3
    43857C15:1 anteiso A2
    43857C16:07.6
    43857C16:0 3OH1
    43857C16:0 N alcohol8.7
    43857C16:1ω5c2
    43857C16:1ω7c / C16:1ω6c6.8
    43857C17:1ω6c1.1
    43857C18:01.1
    43857C11:0 iso 3OH1.8
    43857C15:0 iso29
    43857C15:1 iso G17.1
    43857C16:0 iso2.1
    43857C17:0 iso 3OH10.7
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A agar
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 3
  • software version: Sherlock 6.0
  • library/peak naming table: TSBA 6.0
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperature
43857mountain soil collected in Chungju-si, Chungcheongbuk-do, South KoreaChungju-si, Chungcheongbuk-doRepublic of KoreaKORAsia37.0368127.707R2A agar1 week25
67770Mountain soilChungju-si, Chungcheongbuk-doRepublic of KoreaKORAsia
67771From mountain soilChungju-si, Chungcheongbuk-doRepublic of KoreaKORAsia37.0368127.707

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

@refdescriptionaccessiondatabaselengthNCBI tax ID
4385716S rRNA gene sequenceLC177336.1nuccore
67770Flaviaesturariibacter terrae gene for 16S ribosomal RNA, partial sequenceLC177336ena14691892555

GC content

@refGC-contentmethod
6777143.2
6777043.2high performance liquid chromatography (HPLC)

External links

@ref: 43857

culture collection no.: KCTC 52511, JCM 31723

literature

  • topic: Phylogeny
  • Pubmed-ID: 28809148
  • title: Flaviaesturariibacter terrae sp. nov., isolated from mountain soil.
  • authors: Okiria J, Lee JJ, Park SJ, Lee YH, Lee SY, Park S, Kim BO, Ten LN, Jung HY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001996
  • year: 2017
  • mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43857Joseph Okiria, Jae-Jin Lee, Su-Jin Park, Yeon Hee Lee, Seung-Yeol Lee, Sangkyu Park, Byung-Oh Kim, Leonid N Ten, Hee-Young JungFlaviaesturariibacter terrae sp. nov., isolated from mountain soil10.1099/ijsem.0.001996IJSEM 67: 2660-2664 201728809148
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc