Strain identifier

BacDive ID: 140954

Type strain: Yes

Species: Fodinibius salicampi

Strain Designation: KHM44

NCBI tax ID(s): 1920655 (species)

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General

@ref: 43855

BacDive-ID: 140954

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Fodinibius salicampi KHM44 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from sediment of crystallizing pond, Sinui island, Shinan, Korea.

NCBI tax id

  • NCBI tax id: 1920655
  • Matching level: species

doi: 10.13145/bacdive140954.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/balneolota
  • domain: Bacteria
  • phylum: Balneolota
  • class: Balneolia
  • order: Balneolales
  • family: Balneolaceae
  • genus: Fodinibius
  • species: Fodinibius salicampi
  • full scientific name: Fodinibius salicampi (Cho et al. 2017) Galisteo et al. 2023

  • synonyms

    • @ref: 20215
    • synonym: Aliifodinibius salicampi

@ref: 43855

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Balneolales

family: Balneolaceae

genus: Aliifodinibius

species: Aliifodinibius salicampi

strain designation: KHM44

type strain: yes

Morphology

cell morphology

  • @ref: 43855
  • gram stain: negative
  • cell length: 0.6-1.0 µm
  • cell width: 0.2-0.4 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43855
  • colony color: salmon-pink
  • colony shape: circular
  • incubation period: 5 days
  • medium used: Marine agar

Culture and growth conditions

culture medium

  • @ref: 43855
  • name: Marine agar (MA)
  • growth: yes
  • composition: supplemented with 8% (w/v) NaCl

culture temp

@refgrowthtypetemperaturerange
43855positivegrowth15-50
43855positiveoptimum37mesophilic

culture pH

@refabilitytypepHPH range
43855positivegrowth6.0-9.0alkaliphile
43855positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 43855
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43855
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43855NaClpositivegrowth3-25 %(w/v)
43855NaClpositiveoptimum10 %(w/v)

observation

  • @ref: 43855
  • observation: quinone MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43855168082-dehydro-D-gluconate-builds acid from
43855581435-dehydro-D-gluconate-builds acid from
4385527613amygdalin-builds acid from
4385518305arbutin-builds acid from
4385517057cellobiose-builds acid from
4385515963ribitol-builds acid from
4385517108D-arabinose-builds acid from
4385518333D-arabitol-builds acid from
4385515824D-fructose-builds acid from
4385528847D-fucose-builds acid from
4385512936D-galactose-builds acid from
4385517634D-glucose-builds acid from
4385562318D-lyxose-builds acid from
4385516899D-mannitol-builds acid from
4385516988D-ribose-builds acid from
4385517924D-sorbitol-builds acid from
4385516443D-tagatose-builds acid from
4385516813galactitol-builds acid from
4385517113erythritol-builds acid from
4385528066gentiobiose-builds acid from
4385524265gluconate-builds acid from
4385517754glycerol-builds acid from
4385528087glycogen-builds acid from
4385517268myo-inositol-builds acid from
4385515443inulin-builds acid from
4385530849L-arabinose-builds acid from
4385518403L-arabitol-builds acid from
4385518287L-fucose-builds acid from
4385562345L-rhamnose-builds acid from
4385517266L-sorbose-builds acid from
4385565328L-xylose-builds acid from
4385517716lactose-builds acid from
4385517306maltose-builds acid from
438556731melezitose-builds acid from
4385528053melibiose-builds acid from
43855320061methyl alpha-D-glucopyranoside-builds acid from
4385543943methyl alpha-D-mannoside-builds acid from
4385574863methyl beta-D-xylopyranoside-builds acid from
43855506227N-acetylglucosamine-builds acid from
4385516634raffinose-builds acid from
4385517814salicin-builds acid from
4385528017starch-builds acid from
4385517992sucrose-builds acid from
4385527082trehalose-builds acid from
4385532528turanose-builds acid from
4385517151xylitol-builds acid from
43855168082-dehydro-D-gluconate-carbon source
43855581435-dehydro-D-gluconate-carbon source
4385527613amygdalin-carbon source
4385518305arbutin-carbon source
4385517057cellobiose-carbon source
4385515963ribitol-carbon source
4385517108D-arabinose-carbon source
4385518333D-arabitol-carbon source
4385515824D-fructose-carbon source
4385528847D-fucose-carbon source
4385512936D-galactose-carbon source
4385517634D-glucose-carbon source
4385562318D-lyxose-carbon source
4385516899D-mannitol-carbon source
4385516024D-mannose-carbon source
4385516988D-ribose-carbon source
4385517924D-sorbitol-carbon source
4385516443D-tagatose-carbon source
4385565327D-xylose-carbon source
4385516813galactitol-carbon source
4385517113erythritol-carbon source
438554853esculin-carbon source
4385528066gentiobiose-carbon source
4385524265gluconate-carbon source
4385517754glycerol-carbon source
4385528087glycogen-carbon source
4385517268myo-inositol-carbon source
4385515443inulin-carbon source
4385530849L-arabinose-carbon source
4385518403L-arabitol-carbon source
4385518287L-fucose-carbon source
4385562345L-rhamnose-carbon source
4385517266L-sorbose-carbon source
4385565328L-xylose-carbon source
4385517716lactose-carbon source
4385517306maltose-carbon source
438556731melezitose-carbon source
4385528053melibiose-carbon source
43855320061methyl alpha-D-glucopyranoside-carbon source
4385543943methyl alpha-D-mannoside-carbon source
4385574863methyl beta-D-xylopyranoside-carbon source
43855506227N-acetylglucosamine-carbon source
4385516634raffinose-carbon source
4385517814salicin-carbon source
4385528017starch-carbon source
4385517992sucrose-carbon source
4385527082trehalose-carbon source
4385532528turanose-carbon source
4385517151xylitol-carbon source
43855casein-hydrolysis
4385516991dna-hydrolysis
4385517368hypoxanthine-hydrolysis
4385517895L-tyrosine-hydrolysis
4385528017starch-hydrolysis
4385553424tween 20-hydrolysis
4385553423tween 40-hydrolysis
4385553425tween 60-hydrolysis
4385516199urea-hydrolysis
4385515318xanthine-hydrolysis
4385517632nitrate-reduction
4385516024D-mannose+builds acid from
4385565327D-xylose+builds acid from
438554853esculin+builds acid from
438554853esculin+hydrolysis
438555291gelatin+hydrolysis
4385553426tween 80+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
438556472lincomycinyesyes15 µg (disc)
4385529687teicoplaninyesyes30 µg (disc)
4385517076streptomycinyesyes10 µg (disc)
4385517334penicillinyesyes10 Unit (disc)
4385528001vancomycinyesyes30 µg (disc)
4385548923erythromycinyesyes15 µg (disc)
4385516869oleandomycinyesyes15 µg (disc)
438552676amoxicillinyesyes10 µg (disc)
4385585260spiramycinyesyes100 µg (disc)
4385528077rifampicinyesyes10 µg (disc)
4385528669bacitracinyesyes10 Unit (disc)
4385527641cycloheximideyesyes30 µg (disc)
4385548844roxithromycinyesyes15 µg (disc)
4385580025salinomycinyesyes30 µg (disc)
438553371capreomycinyesyes30 µg (disc)
438555530gramicidin syesyes30 µg (disc)
438552637amikacinyesyes30 µg (disc)
438557507neomycinyesyes30 µg (disc)
438556104kanamycinyesyes30 µg (disc)
43855100147nalidixic acidyesyes30 µg (disc)
4385517833gentamicinyesyes10 µg (disc)
438558309polymyxin byesyes100 Unit (disc)
438557660nystatinyesyes50 µg (disc)
4385527902tetracyclineyesyes30 µg (disc)
4385517636sphingomyelinyesyes30 µg (disc)
438552790apramycinyesyes30 µg (disc)
438559169sisomycinyesyes10 µg (disc)
4385517698chloramphenicolyesyes30 µg (disc)
4385524753hygromycinyesyes30 µg (disc)

metabolite production

  • @ref: 43855
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43855catalase+1.11.1.6
43855cytochrome oxidase+1.9.3.1
43855alkaline phosphatase+3.1.3.1
43855esterase (C 4)+
43855esterase Lipase (C 8)+
43855leucine arylamidase+3.4.11.1
43855valine arylamidase+
43855trypsin+3.4.21.4
43855alpha-chymotrypsin+3.4.21.1
43855naphthol-AS-BI-phosphohydrolase+
43855beta-galactosidase+3.2.1.23
43855N-acetyl-beta-glucosaminidase+3.2.1.52
43855lipase (C 14)-
43855cystine arylamidase-3.4.11.3
43855acid phosphatase-3.1.3.2
43855alpha-galactosidase-3.2.1.22
43855beta-glucuronidase-3.2.1.31
43855alpha-glucosidase-3.2.1.20
43855beta-glucosidase-3.2.1.21
43855alpha-mannosidase-3.2.1.24
43855alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43855C15:0 anteiso7.4
    43855C17:0 anteiso1.3
    43855C17:1 anteiso ω9c1
    43855C15:03.6
    43855C15:1ω6c2.8
    43855C16:02.8
    43855C16:1ω5c2.3
    43855C16:1ω7c / C15:0 iso 2OH22.7
    43855C17:1ω6c1.5
    43855C17:1ω8c2.2
    43855C15:0 iso29.5
    43855C16:0 iso3.8
    43855C17:0 iso2
    43855C17:0 iso 3OH1.6
    43855C17:1 iso ω9c10.3
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine agar
  • agar/liquid: agar
  • incubation temperature: 37
  • incubation time: 5
  • software version: Sherlock 4.5
  • library/peak naming table: TSBA40 4.10
  • system: MIS MIDI
  • instrument: Agilent 6890N gas chromatograph

Isolation, sampling and environmental information

isolation

  • @ref: 43855
  • sample type: sediment of crystallizing pond, Sinui island, Shinan, Korea
  • geographic location: Sinui island, Shinan
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • latitude: 34.568
  • longitude: 126.084
  • enrichment culture: Marine agar
  • enrichment culture composition: addition of 8% (w/v) NaCl (final concentration, 9,95% (w/v) NaCl), pH 7.0
  • enrichment culture duration: 7 days
  • enrichment culture temperature: 28

isolation source categories

Cat1Cat2Cat3
#Condition#Saline
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_17366.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2060;96_8919;97_10725;98_13154;99_17366&stattab=map
  • Last taxonomy: Aliifodinibius
  • 16S sequence: LC198077
  • Sequence Identity:
  • Total samples: 83
  • soil counts: 30
  • aquatic counts: 50
  • animal counts: 2
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 43855
  • description: 16S rRNA gene sequence
  • accession: LC198077
  • database: nuccore

GC content

  • @ref: 43855
  • GC-content: 48.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43855

culture collection no.: KACC 19060, NBRC 112531

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28758626Aliifodinibius salicampi sp. nov., a moderately halophilic bacterium isolated from a grey saltern.Cho GY, Lee JC, Whang KSInt J Syst Evol Microbiol10.1099/ijsem.0.0019812017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Gram-Negative Bacteria/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Salinity, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water MicrobiologyTranscriptome
Phylogeny32123983Aliifodinibius salipaludis sp. nov., Isolated from Saline-Alkaline Soil.Zhao X, Miao S, Sun Y, Gong Q, Zhao J, Wang J, Zhang GCurr Microbiol10.1007/s00284-019-01863-w2020*Bacteria/chemistry/classification/genetics, China, Genome, Bacterial/genetics, Hydrogen-Ion Concentration, Soil MicrobiologyGenetics

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43855Geon-Yeong Cho, Jae-Chan Lee, Kyung Sook WhangAliifodinibius salicampi sp. nov., a moderately halophilic bacterium isolated from a grey saltern10.1099/ijsem.0.001981IJSEM 67: 2598-2603 201728758626
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/