Strain identifier

BacDive ID: 140942

Type strain: Yes

Species: Aquimarina hainanensis

Strain Designation: M124

Strain history: <- Xiao-Hua Zhang, Ocean Univ. of China

NCBI tax ID(s): 1578017 (species)

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General

@ref: 43833

BacDive-ID: 140942

keywords: 16S sequence, Bacteria, obligate aerobe, Gram-negative, rod-shaped, colony-forming

description: Aquimarina hainanensis M124 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms irregular colonies and was isolated from Diseased Pacific white shrimp obtained from a hatchery in Hainan.

NCBI tax id

  • NCBI tax id: 1578017
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Xiao-Hua Zhang, Ocean Univ. of China

doi: 10.13145/bacdive140942.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aquimarina
  • species: Aquimarina hainanensis
  • full scientific name: Aquimarina hainanensis Zheng et al. 2016

@ref: 43833

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aquimarina

species: Aquimarina hainanensis

strain designation: M124

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
43833negative3-5.7 µm0.5 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 43833
  • colony color: Orange
  • colony shape: irregular
  • incubation period: 2-3 days
  • medium used: MA agar

pigmentation

  • @ref: 43833
  • production: no
  • name: Flexirubin

Culture and growth conditions

culture medium

  • @ref: 43833
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43833positivegrowth16-37
43833positiveoptimum28mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepH
43833positivegrowth7-8
43833positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43833obligate aerobe
67771aerobe

spore formation

  • @ref: 43833
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43833NaClpositivegrowth2-5 %(w/v)
43833NaClpositiveoptimum3 %(w/v)

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4383325017leucine-assimilation
4383358187alginate-hydrolysis
43833casein-hydrolysis
4383328017starch-hydrolysis
4383316024D-mannose+assimilation
43833581435-dehydro-D-gluconate+builds acid from
438334853esculin+builds acid from
4383385146carboxymethylcellulose+hydrolysis
4383317029chitin+hydrolysis
4383316991dna+hydrolysis
438334853esculin+hydrolysis
438335291gelatin+hydrolysis
4383353424tween 20+hydrolysis
4383353423tween 40+hydrolysis
4383353426tween 80+hydrolysis
43833167632-oxobutanoate+oxidation
43833286442-oxopentanoate+oxidation
43833865372,2-dimethylsuccinic acid+oxidation
4383330089acetate+oxidation
4383317925alpha-D-glucose+oxidation
4383317057cellobiose+oxidation
4383315824D-fructose+oxidation
4383318024D-galacturonic acid+oxidation
4383314314D-glucose 6-phosphate+oxidation
4383316024D-mannose+oxidation
4383316523D-serine+oxidation
4383329042glucose 1-phosphate+oxidation
4383373804glycyl L-aspartic acid+oxidation
4383324741hydroxyproline+oxidation
4383317596inosine+oxidation
4383321217L-alaninamide+oxidation
4383316977L-alanine+oxidation
4383373786L-alanylglycine+oxidation
4383317196L-asparagine+oxidation
4383329991L-aspartate+oxidation
4383329985L-glutamate+oxidation
4383315729L-ornithine+oxidation
4383317203L-proline+oxidation
4383317115L-serine+oxidation
4383316857L-threonine+oxidation
4383324996lactate+oxidation
43833506227N-acetylglucosamine+oxidation
4383373784glycyl-l-glutamate+oxidation
4383317272propionate+oxidation
4383317748thymidine+oxidation
4383316704uridine+oxidation
4383317632nitrate+reduction

enzymes

@refvalueactivityec
43833cytochrome oxidase+1.9.3.1
43833catalase+1.11.1.6
43833alkaline phosphatase+3.1.3.1
43833esterase (C 4)+
43833trypsin+3.4.21.4
43833valine arylamidase+
43833leucine arylamidase+3.4.11.1
43833naphthol-AS-BI-phosphohydrolase+
43833acid phosphatase+3.1.3.2
43833N-acetyl-beta-glucosaminidase+3.2.1.52
43833esterase Lipase (C 8)-
43833lipase (C 14)-
43833cystine arylamidase-3.4.11.3
43833alpha-chymotrypsin-3.4.21.1
43833alpha-galactosidase-3.2.1.22
43833beta-galactosidase-3.2.1.23
43833alpha-glucosidase-3.2.1.20
43833beta-glucosidase-3.2.1.21
43833beta-glucuronidase-3.2.1.31
43833alpha-mannosidase-3.2.1.24
43833alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43833C16:05.8
    43833C16:0-10-methyl / iso-C17:1ω9c5.3
    43833C16:0 3OH3.4
    43833C16:1ω6c / C16:1ω7c9.2
    43833C18:02
    43833C15:0 iso27.3
    43833C15:0 iso 3OH7.1
    43833C15:1 iso G8.4
    43833C16:0 iso2
    43833C17:0 iso 3OH23.5
  • type of FA analysis: whole cell analysis
  • incubation medium: Ma plates
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.0
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
43833Diseased Pacific white shrimp obtained from a hatchery in HainanHainan ProvinceChinaCHNAsia
67771From diseased Pacific white shrimp, a hatchery in HainanChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Aquaculture
#Environmental#Aquatic#Marine
#Host#Arthropoda#Crustacea

taxonmaps

  • @ref: 69479
  • File name: preview.99_121800.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_47895;97_61567;98_81964;99_121800&stattab=map
  • Last taxonomy: Aquimarina hainanensis subclade
  • 16S sequence: KP200684
  • Sequence Identity:
  • Total samples: 695
  • soil counts: 8
  • aquatic counts: 652
  • animal counts: 34
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 43833
  • description: 16S rRNA gene sequence
  • accession: KP200684
  • database: nuccore

GC content

@refGC-contentmethod
4383333.7high performance liquid chromatography (HPLC)
6777133.7

External links

@ref: 43833

culture collection no.: KCTC 42423, MCCC 1K00498

literature

  • topic: Phylogeny
  • Pubmed-ID: 26463829
  • title: Aquimarina hainanensis sp. nov., isolated from diseased Pacific white shrimp Litopenaeus vannamei larvae.
  • authors: Zheng Y, Wang Y, Liu Y, Li W, Yu M, Zhang XH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000675
  • year: 2015
  • mesh: Animals, Aquaculture, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/metabolism, Larva, Molecular Sequence Data, Penaeidae/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43833Yanfen Zheng, Yanan Wang, Yan Liu, Wentao Li, Mingchao Yu, Xiao-Hua ZhangAquimarina hainanensis sp. nov., isolated from diseased Pacific white shrimp Litopenaeus vannamei larvae10.1099/ijsem.0.000675IJSEM 66: 70-75 201626463829
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/