Strain identifier

BacDive ID: 140915

Type strain: Yes

Species: Comamonas piscis

Strain history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; CN1.

NCBI tax ID(s): 1562974 (species)

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General

@ref: 43781

BacDive-ID: 140915

keywords: 16S sequence, Bacteria, obligate aerobe, Gram-negative, coccus-shaped, colony-forming

description: Comamonas piscis KACC 18403 is an obligate aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from The intestine of a Korean rockfish, Sebastes schlegelii.

NCBI tax id

  • NCBI tax id: 1562974
  • Matching level: species

strain history

  • @ref: 67770
  • history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; CN1.

doi: 10.13145/bacdive140915.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Comamonas
  • species: Comamonas piscis
  • full scientific name: Comamonas piscis Kang et al. 2016

@ref: 43781

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Comamonas

species: Comamonas piscis

type strain: yes

Morphology

cell morphology

  • @ref: 43781
  • gram stain: negative
  • cell length: 0.6-0.7 µm
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 43781
  • colony color: Translucent, pale yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Nutrient agar

Culture and growth conditions

culture medium

  • @ref: 43781
  • name: Nutrient agar (NA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43781positivegrowth10-30
43781positiveoptimum25mesophilic
67770positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
43781positivegrowth6-10alkaliphile
43781positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43781
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
43781NaClpositivegrowth0-3 %(w/v)
43781NaClpositiveoptimum0-1 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4378116383cis-aconitate-assimilation
4378116947citrate-assimilation
4378116000ethanolamine-assimilation
4378115740formate-assimilation
4378124741hydroxyproline-assimilation
43781L-alanine 4-nitroanilide-assimilation
4378153423tween 40-assimilation
4378153426tween 80-assimilation
43781167632-oxobutanoate+assimilation
43781309162-oxoglutarate+assimilation
43781286442-oxopentanoate+assimilation
4378130089acetate+assimilation
4378117128adipate+assimilation
43781645522-hydroxybutyrate+assimilation
437818295beta-hydroxybutyrate+assimilation
4378173706bromosuccinate+assimilation
4378115570D-alanine+assimilation
43781167244-hydroxybutyrate+assimilation
4378128087glycogen+assimilation
4378117196L-asparagine+assimilation
4378129991L-aspartate+assimilation
4378129985L-glutamate+assimilation
4378115603L-leucine+assimilation
4378117203L-proline+assimilation
4378118183L-pyroglutamic acid+assimilation
4378117115L-serine+assimilation
4378116857L-threonine+assimilation
4378124996lactate+assimilation
4378125115malate+assimilation
4378151850methyl pyruvate+assimilation
4378175146monomethyl succinate+assimilation
4378173784glycyl-l-glutamate+assimilation
4378117272propionate+assimilation
4378141865sebacic acid+assimilation
43781143136succinamate+assimilation
4378130031succinate+assimilation
4378117632nitrate+reduction

enzymes

@refvalueactivityec
43781catalase+1.11.1.6
43781cytochrome oxidase+1.9.3.1
43781alkaline phosphatase+3.1.3.1
43781esterase (C 4)+
43781esterase Lipase (C 8)+
43781leucine arylamidase+3.4.11.1
43781acid phosphatase+3.1.3.2
43781naphthol-AS-BI-phosphohydrolase+
43781lipase (C 14)-
43781valine arylamidase-
43781cystine arylamidase-3.4.11.3
43781trypsin-3.4.21.4
43781alpha-chymotrypsin-3.4.21.1
43781alpha-galactosidase-3.2.1.22
43781beta-galactosidase-3.2.1.23
43781alpha-glucuronidase-3.2.1.139
43781beta-glucuronidase-3.2.1.31
43781N-acetyl-beta-glucosaminidase-3.2.1.52
43781alpha-mannosidase-3.2.1.24
43781alpha-fucosidase-3.2.1.51

Isolation, sampling and environmental information

isolation

@refsample typehost species
43781The intestine of a Korean rockfish, Sebastes schlegelii
67770Intestine of a Korean rockfish, Sebastes schlegeliiSebastes schlegelii

isolation source categories

Cat1Cat2
#Host#Fishes
#Host Body-Site#Gastrointestinal tract

Sequence information

16S sequences

  • @ref: 43781
  • description: 16S rRNA gene sequence
  • accession: KM263565
  • database: nuccore

GC content

@refGC-contentmethod
4378165.5Thermal denaturation, fluorometry
6777065.5thermal denaturation, midpoint method (Tm)

External links

@ref: 43781

culture collection no.: KACC 18403, JCM 30718, CN 1

literature

  • topic: Phylogeny
  • Pubmed-ID: 26612039
  • title: Comamonas piscis sp. nov., isolated from the intestine of a Korean rockfish, Sebastes schlegelii.
  • authors: Kang W, Soo Kim P, Hyun DW, Lee JY, Sik Kim H, Joon Oh S, Shin NR, Bae JW
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000790
  • year: 2015

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43781Woorim Kang, Pil Soo Kim, Dong-Wook Hyun, June-Young Lee, Hyun Sik Kim, Sei Joon Oh, Na-Ri Shin, Jin-Woo BaeComamonas piscis sp. nov., isolated from the intestine of a Korean rockfish, Sebastes schlegelii10.1099/ijsem.0.000790IJSEM 66: 780-785 201626612039
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/