Strain identifier

BacDive ID: 140893

Type strain: Yes

Species: Lysobacter terricola

Strain Designation: 5GH218-14

Strain history: S.-W. Kwon; KACC, South Korea; 5GH18-14.

NCBI tax ID(s): 1743261 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 43725

BacDive-ID: 140893

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Lysobacter terricola 5GH218-14 is an aerobe, Gram-negative, motile bacterium that forms irregular colonies and was isolated from Greenhouse soil in the Yangpyeong region.

NCBI tax id

  • NCBI tax id: 1743261
  • Matching level: species

strain history

  • @ref: 67770
  • history: S.-W. Kwon; KACC, South Korea; 5GH18-14.

doi: 10.13145/bacdive140893.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Lysobacter
  • species: Lysobacter terricola
  • full scientific name: Lysobacter terricola Kim et al. 2016

@ref: 43725

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Lysobacteraceae

genus: Lysobacter

species: Lysobacter terricola

strain designation: 5GH218-14

type strain: yes

Morphology

cell morphology

  • @ref: 43725
  • gram stain: negative
  • cell length: 1.5-2 µm
  • cell width: 0.4-0.5 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 43725
  • colony color: Yellow
  • colony shape: irregular
  • medium used: R2A agar

pigmentation

  • @ref: 43725
  • production: no
  • name: Flexirubin-type

Culture and growth conditions

culture medium

@refnamegrowth
43725MacConkey agarno
43725Nutrient agar (NA)yes
43725Reasoner's 2A agar (R2A)yes
43725Trypticase Soy Agar (TSA)no

culture temp

@refgrowthtypetemperaturerange
43725positivegrowth10-33
43725positiveoptimum28-30mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43725positivegrowth6-10alkaliphile
43725positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43725
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43725
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43725NaClpositivegrowth0 %(w/v)
43725NaClnogrowth1 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43725161933-hydroxybenzoate-assimilation
43725178794-hydroxybenzoate-assimilation
4372517128adipate-assimilation
4372527689decanoate-assimilation
4372517634D-glucose-assimilation
4372516899D-mannitol-assimilation
4372516024D-mannose-assimilation
4372516988D-ribose-assimilation
4372517924D-sorbitol-assimilation
4372517268myo-inositol-assimilation
4372517240itaconate-assimilation
4372516977L-alanine-assimilation
4372530849L-arabinose-assimilation
4372518287L-fucose-assimilation
4372515971L-histidine-assimilation
4372517203L-proline-assimilation
4372562345L-rhamnose-assimilation
4372517115L-serine-assimilation
4372524996lactate-assimilation
4372525115malate-assimilation
4372517306maltose-assimilation
4372528053melibiose-assimilation
43725506227N-acetylglucosamine-assimilation
4372518401phenylacetate-assimilation
43725potassium 2-dehydro-D-gluconate-assimilation
43725potassium 5-dehydro-D-gluconate-assimilation
4372532032potassium gluconate-assimilation
4372517814salicin-assimilation
4372553258sodium citrate-assimilation
4372562983sodium malonate-assimilation
437259300suberic acid-assimilation
4372517992sucrose-assimilation
4372531011valerate-assimilation
4372517234glucose-fermentation
4372562968cellulose-hydrolysis
4372517029chitin-hydrolysis
4372516991dna-hydrolysis
4372517368hypoxanthine-hydrolysis
4372528017starch-hydrolysis
4372553426tween 80-hydrolysis
4372515318xanthine-hydrolysis
4372517632nitrate-reduction
43725370543-hydroxybutyrate+assimilation
4372528087glycogen+assimilation
4372517272propionate+assimilation
4372532954sodium acetate+assimilation
43725casein+hydrolysis
437254853esculin+hydrolysis
437255291gelatin+hydrolysis
4372518186tyrosine+hydrolysis

metabolite production

  • @ref: 43725
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43725alkaline phosphatase+3.1.3.1
43725cytochrome oxidase+1.9.3.1
43725esterase (C 4)+
43725leucine arylamidase+3.4.11.1
43725acid phosphatase+3.1.3.2
43725naphthol-AS-BI-phosphohydrolase+
43725beta-galactosidase+3.2.1.23
43725alpha-glucosidase+3.2.1.20
43725N-acetyl-beta-glucosaminidase+3.2.1.52
43725esterase Lipase (C 8)-
43725lipase (C 14)-
43725valine arylamidase-
43725cystine arylamidase-3.4.11.3
43725trypsin-3.4.21.4
43725alpha-chymotrypsin-3.4.21.1
43725alpha-galactosidase-3.2.1.22
43725beta-glucuronidase-3.2.1.31
43725beta-glucosidase-3.2.1.21
43725alpha-mannosidase-3.2.1.24
43725alpha-fucosidase-3.2.1.51
43725catalase-1.11.1.6
43725arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43725C10:05.09
    43725C10:0 3OH8.29
    43725C16:014.29
    43725C16:1ω7c / C15:0 iso 2OH17.43
    43725C18:01.14
    43725C18:1ω7c49.1
    43725C19:1ω6c / unknown 18.8461.23
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A agar
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 2
  • incubation_oxygen: aerobic
  • software version: Sherlock 5.0
  • library/peak naming table: TSBA50
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
43725Greenhouse soil in the Yangpyeong regionYangpyeong region, Gyeonggi provinceRepublic of KoreaKORAsia
67770Greenhouse soil in the Yangpyeong regionGyeonggi ProvinceRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Greenhouse
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_2870.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_1523;97_1817;98_2224;99_2870&stattab=map
  • Last taxonomy: Lysobacter
  • 16S sequence: KR869779
  • Sequence Identity:
  • Total samples: 53688
  • soil counts: 37305
  • aquatic counts: 5500
  • animal counts: 3985
  • plant counts: 6898

Sequence information

16S sequences

  • @ref: 43725
  • description: 16S rRNA gene sequence
  • accession: KR869779
  • database: nuccore

GC content

@refGC-contentmethod
4372565.9Thermal denaturation, fluorometry
6777065.9thermal denaturation, midpoint method (Tm)

External links

@ref: 43725

culture collection no.: KACC 16954, JCM 30862

literature

  • topic: Phylogeny
  • Pubmed-ID: 26763907
  • title: Lysobacter terricola sp. nov., isolated from greenhouse soil.
  • authors: Kim SJ, Ahn JH, Weon HY, Hong SB, Seok SJ, Kim JS, Kwon SW
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000893
  • year: 2016

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43725Soo-Jin Kim, Jae-Hyung Ahn, Hang-Yeon Weon, Seung-Beom Hong, Soon-Ja Seok, Jeong-Seon Kim, Soon-Wo KwonLysobacter terricola sp. nov., isolated from greenhouse soil10.1099/ijsem.0.000893IJSEM 66: 1401-1406 201626763907
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/