Strain identifier
BacDive ID: 140887
Type strain:
Species: Flavobacterium lutivivi
Strain Designation: HQQ
NCBI tax ID(s): 1677894 (species)
General
@ref: 43717
BacDive-ID: 140887
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, Gram-negative, motile, rod-shaped, colony-forming
description: Flavobacterium lutivivi HQQ is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from The Zhuozhou wastewater treatment plant.
NCBI tax id
- NCBI tax id: 1677894
- Matching level: species
doi: 10.13145/bacdive140887.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium lutivivi
- full scientific name: Flavobacterium lutivivi Feng et al. 2016
@ref: 43717
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium lutivivi
strain designation: HQQ
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
43717 | negative | 0.8-1 µm | 0.3-0.4 nm | rod-shaped | yes | |
69480 | negative | 99.997 |
colony morphology
- @ref: 43717
- colony size: 1.8-2.5 mm
- colony color: Yellow
- colony shape: circular
- incubation period: 3 days
- medium used: R2A agar
pigmentation
- @ref: 43717
- production: no
- name: Flexirubin-type
Culture and growth conditions
culture medium
@ref | name | growth |
---|---|---|
43717 | LB (Luria-Bertani) MEDIUM | no |
43717 | MA agar | no |
43717 | NA agar | no |
43717 | Reasoner's 2A agar (R2A) | yes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43717 | positive | growth | 18-37 | |
43717 | positive | optimum | 25 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
43717 | positive | growth | 6-9 | alkaliphile |
43717 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 43717
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 100 |
halophily
@ref | salt | growth | tested relation | concentration | halophily level |
---|---|---|---|---|---|
43717 | NaCl | positive | growth | 0-1 %(w/v) | |
43717 | NaCl | positive | optimum | 0 %(w/v) | non-halophilic |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43717 | 90259 | 4-nitrophenyl beta-D-glucopyranoside | - | assimilation |
43717 | 17128 | adipate | - | assimilation |
43717 | 27689 | decanoate | - | assimilation |
43717 | 17634 | D-glucose | - | assimilation |
43717 | 16024 | D-mannose | - | assimilation |
43717 | 25115 | malate | - | assimilation |
43717 | 17754 | glycerol | - | assimilation |
43717 | 18401 | phenylacetate | - | assimilation |
43717 | 53258 | sodium citrate | - | assimilation |
43717 | 27613 | amygdalin | - | builds acid from |
43717 | 18305 | arbutin | - | builds acid from |
43717 | 17057 | cellobiose | - | builds acid from |
43717 | 15963 | ribitol | - | builds acid from |
43717 | 17108 | D-arabinose | - | builds acid from |
43717 | 18333 | D-arabitol | - | builds acid from |
43717 | 15824 | D-fructose | - | builds acid from |
43717 | 28847 | D-fucose | - | builds acid from |
43717 | 12936 | D-galactose | - | builds acid from |
43717 | 62318 | D-lyxose | - | builds acid from |
43717 | 16899 | D-mannitol | - | builds acid from |
43717 | 16988 | D-ribose | - | builds acid from |
43717 | 17924 | D-sorbitol | - | builds acid from |
43717 | 16443 | D-tagatose | - | builds acid from |
43717 | 65327 | D-xylose | - | builds acid from |
43717 | 16813 | galactitol | - | builds acid from |
43717 | 17113 | erythritol | - | builds acid from |
43717 | 28066 | gentiobiose | - | builds acid from |
43717 | 17268 | myo-inositol | - | builds acid from |
43717 | 15443 | inulin | - | builds acid from |
43717 | 30849 | L-arabinose | - | builds acid from |
43717 | 18403 | L-arabitol | - | builds acid from |
43717 | 18287 | L-fucose | - | builds acid from |
43717 | 62345 | L-rhamnose | - | builds acid from |
43717 | 17266 | L-sorbose | - | builds acid from |
43717 | 65328 | L-xylose | - | builds acid from |
43717 | 17716 | lactose | - | builds acid from |
43717 | 28053 | melibiose | - | builds acid from |
43717 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
43717 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
43717 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
43717 | 506227 | N-acetylglucosamine | - | builds acid from |
43717 | potassium 2-dehydro-D-gluconate | - | builds acid from | |
43717 | potassium 5-dehydro-D-gluconate | - | builds acid from | |
43717 | 32032 | potassium gluconate | - | builds acid from |
43717 | 16634 | raffinose | - | builds acid from |
43717 | 17814 | salicin | - | builds acid from |
43717 | 28017 | starch | - | builds acid from |
43717 | 17992 | sucrose | - | builds acid from |
43717 | 27082 | trehalose | - | builds acid from |
43717 | 32528 | turanose | - | builds acid from |
43717 | 17151 | xylitol | - | builds acid from |
43717 | 25094 | lysine | - | hydrolysis |
43717 | 18257 | ornithine | - | hydrolysis |
43717 | 16199 | urea | - | hydrolysis |
43717 | 17632 | nitrate | - | reduction |
43717 | 17634 | D-glucose | + | builds acid from |
43717 | 16024 | D-mannose | + | builds acid from |
43717 | 4853 | esculin | + | builds acid from |
43717 | 28087 | glycogen | + | builds acid from |
43717 | 17306 | maltose | + | builds acid from |
43717 | 6731 | melezitose | + | builds acid from |
43717 | 85146 | carboxymethylcellulose | + | hydrolysis |
43717 | casein | + | hydrolysis | |
43717 | 4853 | esculin | + | hydrolysis |
43717 | 5291 | gelatin | + | hydrolysis |
43717 | 28017 | starch | + | hydrolysis |
43717 | 18186 | tyrosine | + | hydrolysis |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | is resistant | resistance conc. |
---|---|---|---|---|---|---|---|
43717 | 2637 | amikacin | yes | yes | 30 µg (disc) | ||
43717 | 3393 | carbenicillin | yes | yes | 100 µg (disc) | ||
43717 | 474053 | cefazolin | yes | yes | 30 µg (disc) | ||
43717 | 3493 | cefoperazone | yes | yes | 30 µg (disc) | ||
43717 | 3547 | cephradine | yes | yes | 30 µg (disc) | ||
43717 | 17698 | chloramphenicol | yes | yes | 30 µg (disc) | ||
43717 | 100241 | ciprofloxacin | yes | yes | 5 µg (disc) | ||
43717 | 3745 | clindamycin | yes | yes | 2 µg (disc) | ||
43717 | 3508 | ceftazidime | yes | yes | 30 µg (disc) | ||
43717 | 48923 | erythromycin | yes | yes | 15 µg (disc) | ||
43717 | 5195 | furazolidone | yes | yes | 15 µg (disc) | ||
43717 | 100246 | norfloxacin | yes | yes | 10 µg (disc) | ||
43717 | 17833 | gentamicin | yes | yes | 10 µg (disc) | ||
43717 | 6104 | kanamycin | yes | yes | 30 µg (disc) | ||
43717 | 31845 | midecamycin | yes | yes | 30 µg (disc) | ||
43717 | 7507 | neomycin | yes | yes | 30 µg (disc) | ||
43717 | 27902 | tetracycline | yes | yes | 30 µg (disc) | ||
43717 | 28001 | vancomycin | yes | yes | 30 µg (disc) | ||
43717 | 3515 | cefuroxime | yes | yes | 30 µg (disc) | ||
43717 | 29007 | ceftriaxone | yes | yes | 30 µg (disc) | ||
43717 | 50845 | doxycycline | yes | yes | 30 µg (disc) | ||
43717 | 50694 | minocycline | yes | yes | 30 µg (disc) | ||
43717 | 8232 | piperacillin | yes | yes | 100 µg (disc) | ||
43717 | 28971 | ampicillin | yes | yes | 10 µg (disc) | ||
43717 | 3770 | co-trimoxazole | yes | yes | 25 µg (disc) | ||
43717 | 3534 | cephalexin | yes | yes | 30 µg (disc) | ||
43717 | 7731 | ofloxacin | yes | yes | 5 µg (disc) | ||
43717 | 18208 | penicillin g | yes | yes | 10 Unit (disc) | ||
43717 | 8309 | polymyxin b | yes | yes | 300 Unit (disc) | ||
43717 | 7809 | oxacillin | yes | yes | 1 µg (disc) |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
43717 | 15688 | acetoin | no |
43717 | 16136 | hydrogen sulfide | no |
43717 | 35581 | indole | no |
metabolite tests
- @ref: 43717
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
43717 | arginine dihydrolase | - | 3.5.3.6 |
43717 | tryptophan deaminase | - | 4.1.99.1 |
43717 | lipase (C 14) | - | |
43717 | cystine arylamidase | - | 3.4.11.3 |
43717 | chymotrypsin | - | 3.4.4.5 |
43717 | beta-galactosidase | - | 3.2.1.23 |
43717 | beta-glucosidase | - | 3.2.1.21 |
43717 | beta-D-fucosidase | - | 3.2.1.38 |
43717 | alpha-galactosidase | - | 3.2.1.22 |
43717 | beta-glucuronidase | - | 3.2.1.31 |
43717 | alpha-mannosidase | - | 3.2.1.24 |
43717 | alkaline phosphatase | + | 3.1.3.1 |
43717 | esterase (C 4) | + | |
43717 | esterase Lipase (C 8) | + | |
43717 | leucine arylamidase | + | 3.4.11.1 |
43717 | valine arylamidase | + | |
43717 | trypsin | + | 3.4.21.4 |
43717 | acid phosphatase | + | 3.1.3.2 |
43717 | naphthol-AS-BI-phosphohydrolase | + | |
43717 | alpha-glucosidase | + | 3.2.1.20 |
43717 | cytochrome oxidase | + | 1.9.3.1 |
43717 | catalase | + | 1.11.1.6 |
Isolation, sampling and environmental information
isolation
- @ref: 43717
- sample type: The Zhuozhou wastewater treatment plant
- geographic location: Baoding city, Hebei Province
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 39.524
- longitude: 115.803
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Waste | #Wastewater |
#Engineered | #Waste | #Water treatment plant |
taxonmaps
- @ref: 69479
- File name: preview.99_13514.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_6926;97_8306;98_10206;99_13514&stattab=map
- Last taxonomy: Flavobacterium lutivivi subclade
- 16S sequence: KT215492
- Sequence Identity:
- Total samples: 1294
- soil counts: 9
- aquatic counts: 1204
- animal counts: 72
- plant counts: 9
Sequence information
16S sequences
- @ref: 43717
- description: 16S rRNA gene sequence
- accession: KT215492
- database: nuccore
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Flavobacterium lutivivi CGMCC 1.15347 | GCA_014642275 | scaffold | ncbi | 1677894 |
66792 | Flavobacterium lutivivi strain CGMCC 1.15347 | 1677894.3 | wgs | patric | 1677894 |
GC content
- @ref: 43717
- GC-content: 32
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 96.758 | no |
gram-positive | no | 98.287 | no |
anaerobic | no | 99.116 | yes |
aerobic | yes | 87.885 | no |
halophile | no | 97.086 | yes |
spore-forming | no | 95.542 | no |
thermophile | no | 90.695 | yes |
glucose-util | yes | 73.639 | yes |
motile | no | 94.045 | no |
glucose-ferment | no | 91.621 | no |
External links
@ref: 43717
culture collection no.: CGMCC 1.15347, KCTC 42935
literature
- topic: Phylogeny
- Pubmed-ID: 26769164
- title: Flavobacterium lutivivi sp. nov., isolated from activated sludge.
- authors: Feng Q, Han L, Nogi Y, Hong Q, Lv J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000892
- year: 2016
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
43717 | Qingqing Feng, Lu Han, Yuichi Nogi, Qing Hong, Jie Lv | Flavobacterium lutivivi sp. nov., isolated from activated sludge | 10.1099/ijsem.0.000892 | IJSEM 66: 1394-1400 2016 | 26769164 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |