Strain identifier

BacDive ID: 140887

Type strain: Yes

Species: Flavobacterium lutivivi

Strain Designation: HQQ

NCBI tax ID(s): 1677894 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43717

BacDive-ID: 140887

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Flavobacterium lutivivi HQQ is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from The Zhuozhou wastewater treatment plant.

NCBI tax id

  • NCBI tax id: 1677894
  • Matching level: species

doi: 10.13145/bacdive140887.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium lutivivi
  • full scientific name: Flavobacterium lutivivi Feng et al. 2016

@ref: 43717

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium lutivivi

strain designation: HQQ

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
43717negative0.8-1 µm0.3-0.4 nmrod-shapedyes
69480negative99.997

colony morphology

  • @ref: 43717
  • colony size: 1.8-2.5 mm
  • colony color: Yellow
  • colony shape: circular
  • incubation period: 3 days
  • medium used: R2A agar

pigmentation

  • @ref: 43717
  • production: no
  • name: Flexirubin-type

Culture and growth conditions

culture medium

@refnamegrowth
43717LB (Luria-Bertani) MEDIUMno
43717MA agarno
43717NA agarno
43717Reasoner's 2A agar (R2A)yes

culture temp

@refgrowthtypetemperaturerange
43717positivegrowth18-37
43717positiveoptimum25mesophilic

culture pH

@refabilitytypepHPH range
43717positivegrowth6-9alkaliphile
43717positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43717
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no100

halophily

@refsaltgrowthtested relationconcentrationhalophily level
43717NaClpositivegrowth0-1 %(w/v)
43717NaClpositiveoptimum0 %(w/v)non-halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43717902594-nitrophenyl beta-D-glucopyranoside-assimilation
4371717128adipate-assimilation
4371727689decanoate-assimilation
4371717634D-glucose-assimilation
4371716024D-mannose-assimilation
4371725115malate-assimilation
4371717754glycerol-assimilation
4371718401phenylacetate-assimilation
4371753258sodium citrate-assimilation
4371727613amygdalin-builds acid from
4371718305arbutin-builds acid from
4371717057cellobiose-builds acid from
4371715963ribitol-builds acid from
4371717108D-arabinose-builds acid from
4371718333D-arabitol-builds acid from
4371715824D-fructose-builds acid from
4371728847D-fucose-builds acid from
4371712936D-galactose-builds acid from
4371762318D-lyxose-builds acid from
4371716899D-mannitol-builds acid from
4371716988D-ribose-builds acid from
4371717924D-sorbitol-builds acid from
4371716443D-tagatose-builds acid from
4371765327D-xylose-builds acid from
4371716813galactitol-builds acid from
4371717113erythritol-builds acid from
4371728066gentiobiose-builds acid from
4371717268myo-inositol-builds acid from
4371715443inulin-builds acid from
4371730849L-arabinose-builds acid from
4371718403L-arabitol-builds acid from
4371718287L-fucose-builds acid from
4371762345L-rhamnose-builds acid from
4371717266L-sorbose-builds acid from
4371765328L-xylose-builds acid from
4371717716lactose-builds acid from
4371728053melibiose-builds acid from
43717320061methyl alpha-D-glucopyranoside-builds acid from
4371743943methyl alpha-D-mannoside-builds acid from
4371774863methyl beta-D-xylopyranoside-builds acid from
43717506227N-acetylglucosamine-builds acid from
43717potassium 2-dehydro-D-gluconate-builds acid from
43717potassium 5-dehydro-D-gluconate-builds acid from
4371732032potassium gluconate-builds acid from
4371716634raffinose-builds acid from
4371717814salicin-builds acid from
4371728017starch-builds acid from
4371717992sucrose-builds acid from
4371727082trehalose-builds acid from
4371732528turanose-builds acid from
4371717151xylitol-builds acid from
4371725094lysine-hydrolysis
4371718257ornithine-hydrolysis
4371716199urea-hydrolysis
4371717632nitrate-reduction
4371717634D-glucose+builds acid from
4371716024D-mannose+builds acid from
437174853esculin+builds acid from
4371728087glycogen+builds acid from
4371717306maltose+builds acid from
437176731melezitose+builds acid from
4371785146carboxymethylcellulose+hydrolysis
43717casein+hydrolysis
437174853esculin+hydrolysis
437175291gelatin+hydrolysis
4371728017starch+hydrolysis
4371718186tyrosine+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
437172637amikacinyesyes30 µg (disc)
437173393carbenicillinyesyes100 µg (disc)
43717474053cefazolinyesyes30 µg (disc)
437173493cefoperazoneyesyes30 µg (disc)
437173547cephradineyesyes30 µg (disc)
4371717698chloramphenicolyesyes30 µg (disc)
43717100241ciprofloxacinyesyes5 µg (disc)
437173745clindamycinyesyes2 µg (disc)
437173508ceftazidimeyesyes30 µg (disc)
4371748923erythromycinyesyes15 µg (disc)
437175195furazolidoneyesyes15 µg (disc)
43717100246norfloxacinyesyes10 µg (disc)
4371717833gentamicinyesyes10 µg (disc)
437176104kanamycinyesyes30 µg (disc)
4371731845midecamycinyesyes30 µg (disc)
437177507neomycinyesyes30 µg (disc)
4371727902tetracyclineyesyes30 µg (disc)
4371728001vancomycinyesyes30 µg (disc)
437173515cefuroximeyesyes30 µg (disc)
4371729007ceftriaxoneyesyes30 µg (disc)
4371750845doxycyclineyesyes30 µg (disc)
4371750694minocyclineyesyes30 µg (disc)
437178232piperacillinyesyes100 µg (disc)
4371728971ampicillinyesyes10 µg (disc)
437173770co-trimoxazoleyesyes25 µg (disc)
437173534cephalexinyesyes30 µg (disc)
437177731ofloxacinyesyes5 µg (disc)
4371718208penicillin gyesyes10 Unit (disc)
437178309polymyxin byesyes300 Unit (disc)
437177809oxacillinyesyes1 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
4371715688acetoinno
4371716136hydrogen sulfideno
4371735581indoleno

metabolite tests

  • @ref: 43717
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
43717arginine dihydrolase-3.5.3.6
43717tryptophan deaminase-4.1.99.1
43717lipase (C 14)-
43717cystine arylamidase-3.4.11.3
43717chymotrypsin-3.4.4.5
43717beta-galactosidase-3.2.1.23
43717beta-glucosidase-3.2.1.21
43717beta-D-fucosidase-3.2.1.38
43717alpha-galactosidase-3.2.1.22
43717beta-glucuronidase-3.2.1.31
43717alpha-mannosidase-3.2.1.24
43717alkaline phosphatase+3.1.3.1
43717esterase (C 4)+
43717esterase Lipase (C 8)+
43717leucine arylamidase+3.4.11.1
43717valine arylamidase+
43717trypsin+3.4.21.4
43717acid phosphatase+3.1.3.2
43717naphthol-AS-BI-phosphohydrolase+
43717alpha-glucosidase+3.2.1.20
43717cytochrome oxidase+1.9.3.1
43717catalase+1.11.1.6

Isolation, sampling and environmental information

isolation

  • @ref: 43717
  • sample type: The Zhuozhou wastewater treatment plant
  • geographic location: Baoding city, Hebei Province
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 39.524
  • longitude: 115.803

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Wastewater
#Engineered#Waste#Water treatment plant

taxonmaps

  • @ref: 69479
  • File name: preview.99_13514.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_6926;97_8306;98_10206;99_13514&stattab=map
  • Last taxonomy: Flavobacterium lutivivi subclade
  • 16S sequence: KT215492
  • Sequence Identity:
  • Total samples: 1294
  • soil counts: 9
  • aquatic counts: 1204
  • animal counts: 72
  • plant counts: 9

Sequence information

16S sequences

  • @ref: 43717
  • description: 16S rRNA gene sequence
  • accession: KT215492
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium lutivivi CGMCC 1.15347GCA_014642275scaffoldncbi1677894
66792Flavobacterium lutivivi strain CGMCC 1.153471677894.3wgspatric1677894

GC content

  • @ref: 43717
  • GC-content: 32
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno96.758no
gram-positiveno98.287no
anaerobicno99.116yes
aerobicyes87.885no
halophileno97.086yes
spore-formingno95.542no
thermophileno90.695yes
glucose-utilyes73.639yes
motileno94.045no
glucose-fermentno91.621no

External links

@ref: 43717

culture collection no.: CGMCC 1.15347, KCTC 42935

literature

  • topic: Phylogeny
  • Pubmed-ID: 26769164
  • title: Flavobacterium lutivivi sp. nov., isolated from activated sludge.
  • authors: Feng Q, Han L, Nogi Y, Hong Q, Lv J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000892
  • year: 2016

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43717Qingqing Feng, Lu Han, Yuichi Nogi, Qing Hong, Jie LvFlavobacterium lutivivi sp. nov., isolated from activated sludge10.1099/ijsem.0.000892IJSEM 66: 1394-1400 201626769164
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1