Strain identifier
BacDive ID: 140876
Type strain: 
Species: Asanoa endophytica
Strain Designation: BR3-1
NCBI tax ID(s): 1623397 (species)
version 8.1 (current version)
General
@ref: 67657
BacDive-ID: 140876
DSM-Number: 111646
keywords: 16S sequence, Bacteria, thermophilic, Gram-positive
description: Asanoa endophytica BR3-1 is a thermophilic, Gram-positive bacterium that was isolated from The rhizome of Boesenbergia rotunda collected from Udon Thani Province.
NCBI tax id
- NCBI tax id: 1623397
- Matching level: species
doi: 10.13145/bacdive140876.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Asanoa
- species: Asanoa endophytica
- full scientific name: Asanoa endophytica Niemhom et al. 2016
@ref: 67657
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micromonosporales
family: Micromonosporaceae
genus: Asanoa
species: Asanoa endophytica
full scientific name: Asanoa endophytica Niemhom et al. 2016
strain designation: BR3-1
type strain: yes
Morphology
cell morphology
- @ref: 43703
- gram stain: positive
- motility: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 43703 | ISP 2 | yes | ||
| 43703 | ISP 3 | yes | ||
| 43703 | ISP 6 | yes | ||
| 43703 | Nutrient agar (NA) | yes | ||
| 67657 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 67657 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://mediadive.dsmz.de/medium/987 | Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water |
| 67657 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 43703 | positive | maximum | 40 | thermophilic |
| 67657 | positive | growth | 28 | mesophilic |
culture pH
- @ref: 43703
- ability: positive
- type: growth
- pH: 5-10
- PH range: alkaliphile
Physiology and metabolism
halophily
- @ref: 43703
- salt: NaCl
- growth: positive
- tested relation: maximum
- concentration: 2 %(w/v)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43703 | 15978 | glycerol 3-phosphate | - | carbon source |
| 43703 | 17716 | lactose | - | carbon source |
| 43703 | 28053 | melibiose | - | carbon source |
| 43703 | 17268 | myo-inositol | - | carbon source |
| 43703 | 16634 | raffinose | - | carbon source |
| 43703 | 17814 | salicin | - | carbon source |
| 43703 | 5291 | gelatin | - | hydrolysis |
| 43703 | 17632 | nitrate | - | reduction |
| 43703 | 17057 | cellobiose | + | carbon source |
| 43703 | 17634 | D-glucose | + | carbon source |
| 43703 | 65327 | D-xylose | + | carbon source |
| 43703 | 29864 | mannitol | + | carbon source |
| 43703 | 17992 | sucrose | + | carbon source |
| 43703 | 28017 | starch | + | hydrolysis |
| 43703 | 15824 | D-fructose | +/- | carbon source |
| 43703 | 12936 | D-galactose | +/- | carbon source |
| 43703 | 16024 | D-mannose | +/- | carbon source |
| 43703 | 16988 | D-ribose | +/- | carbon source |
| 43703 | 30849 | L-arabinose | +/- | carbon source |
| 43703 | 62345 | L-rhamnose | +/- | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 43703 | The rhizome of Boesenbergia rotunda collected from Udon Thani Province | Udon Thani Province | Thailand | THA | Asia |
| 67657 | Rhizome of plant, Boesenbergia rotunda | Udon Thani | Thailand | THA | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_77379.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_404;97_11524;98_18497;99_77379&stattab=map
- Last taxonomy: Asanoa
- 16S sequence: LC032127
- Sequence Identity:
- Total samples: 44
- soil counts: 41
- aquatic counts: 3
Safety information
risk assessment
- @ref: 67657
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 43703
- description: 16S rRNA gene sequence
- accession: LC032127
- database: nuccore
GC content
- @ref: 43703
- GC-content: 71.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67657
culture collection no.: BCC 66355, NBRC 110002, DSM 111646
straininfo link
- @ref: 96805
- straininfo: 401816
literature
- topic: Phylogeny
- Pubmed-ID: 26763906
- title: Asanoa endophytica sp. nov., an endophytic actinomycete isolated from the rhizome of Boesenbergia rotunda.
- authors: Niemhom N, Chutrakul C, Suriyachadkun C, Thawai C
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000891
- year: 2016
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 43703 | Nantawan Niemhom, Chanikul Chutrakul, Chanwit Suriyachadkun, Chitti Thawai | Asanoa endophytica sp. nov., an endophytic actinomycete isolated from the rhizome of Boesenbergia rotunda | 10.1099/ijsem.0.000891 | IJSEM 66: 1377-1382 2016 | 26763906 | |
| 67657 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-111646 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111646) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 96805 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401816.1 |