Strain identifier

BacDive ID: 140854

Type strain: Yes

Species: Achromobacter marplatensis

Strain Designation: B2

Strain history: CIP <- 2014, CECT <- 2007, M. Gomila, Illes Balears Univ., Palma de Mallorca, Balearic Islands, Spain: strain B2

NCBI tax ID(s): 470868 (species)

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General

@ref: 43665

BacDive-ID: 140854

keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative, colony-forming

description: Achromobacter marplatensis B2 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Soil.

NCBI tax id

  • NCBI tax id: 470868
  • Matching level: species

strain history

  • @ref: 120842
  • history: CIP <- 2014, CECT <- 2007, M. Gomila, Illes Balears Univ., Palma de Mallorca, Balearic Islands, Spain: strain B2

doi: 10.13145/bacdive140854.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter marplatensis
  • full scientific name: Achromobacter marplatensis Gomila et al. 2011

  • synonyms

    • @ref: 20215
    • synonym: Achromobacter spiritinus

@ref: 43665

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter marplatensis

strain designation: B2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthmotilityconfidencecell shape
43665negative1.4-2.8 µm0.4-1.1 µmno
69480yes96.739
69480negative99.986
120842negativenorod-shaped

colony morphology

  • @ref: 43665
  • colony size: 1-2 mm
  • colony color: non-pigmented, translucent
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Trypticase Soy Agar

Culture and growth conditions

culture medium

@refnamegrowthlink
43665Trypticase Soy Agaryes
120842CIP Medium 328yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328

culture temp

  • @ref: 60931
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 60931
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.843

halophily

@refsaltgrowthtested relationconcentration
43665NaClpositivegrowth3 %
43665NaClnogrowth6 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4366516024D-mannose-assimilation
4366517234glucose-assimilation
4366530849L-arabinose-assimilation
4366517306maltose-assimilation
4366517234glucose-builds acid from
436655291gelatin-hydrolysis
4366517925alpha-D-glucose-oxidation
43665645522-hydroxybutyrate-oxidation
4366516024D-mannose-oxidation
4366516865gamma-aminobutyric acid-oxidation
4366570744glycine-proline-oxidation
4366517128adipate+assimilation
4366527689decanoate+assimilation
4366516947citrate+assimilation
4366518391D-gluconate+assimilation
4366524996lactate+assimilation
4366515589L-malate+assimilation
4366518401phenylacetate+assimilation
4366515588D-malate+oxidation
4366516651(S)-lactate+oxidation
43665309162-oxoglutarate+oxidation
4366530089acetate+oxidation
436658295beta-hydroxybutyrate+oxidation
4366533801D-saccharate+oxidation
4366516977L-alanine+oxidation
4366515971L-histidine+oxidation
4366518183L-pyroglutamic acid+oxidation
4366517632nitrate+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
4366575229sodium bromateyesyes
4366526710sodium chlorideyesyes
4366571321fusidateyesyes
4366516523d-serineyesyes
4366545735troleandomycinyesyes
4366575273niaproofyesyes
4366575198tetrazolium blueyesyes
43665100147nalidixic acidyesyes
4366564103sodium butyrateyesyes

enzymes

@refvalueactivityec
43665cytochrome oxidase+1.9.3.1
43665lipase+
43665acid phosphatase+3.1.3.2
43665valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
43665SoilArgentinaArgentinaARGMiddle and South America2001
60931Soil contaminated with pentachlorophenolBuenos Aires,Mar del PlataArgentinaARGMiddle and South America
120842Environment, Soil by selective enrichment with pentachlorophenolMar del PlataArgentinaARGMiddle and South America2001-01-02

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 120842
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Achromobacter marplatensis LMG 26219GCA_902859635contigncbi470868
66792Achromobacter marplatensis CECT 7342GCA_003315095scaffoldncbi470868
66792Achromobacter marplatensis strain CECT 7342470868.5wgspatric470868
66792Achromobacter marplatensis strain LMG 26219470868.6wgspatric470868
66792Achromobacter marplatensis CECT 73422770939588draftimg470868

GC content

  • @ref: 43665
  • GC-content: 65.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes87.292yes
flagellatedno65.179yes
gram-positiveno98.574no
anaerobicno98.418yes
aerobicyes85.457yes
halophileno90.695no
spore-formingno94.892no
glucose-utilno61.582yes
thermophileno99.636yes
glucose-fermentno90.404no

External links

@ref: 43665

culture collection no.: CCUG 56371, CCM 7608, CECT 7342, LMG 26219, CIP 110817

straininfo link

  • @ref: 96800
  • straininfo: 374759

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20952547Achromobacter marplatensis sp. nov., isolated from a pentachlorophenol-contaminated soil.Gomila M, Tvrzova L, Teshim A, Sedlacek I, Gonzalez-Escalona N, Zdrahal Z, Sedo O, Gonzalez JF, Bennasar A, Moore ERB, Lalucat J, Murialdo SEInt J Syst Evol Microbiol10.1099/ijs.0.025304-02010Achromobacter/*classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Pentachlorophenol/*metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/*metabolismMetabolism
Phylogeny26738485Reclassification of Achromobacter spiritinus Vandamme et al. 2013 as a later heterotypic synonym of Achromobacter marplatensis Gomila et al. 2011.Vandamme PA, Peeters C, Cnockaert M, Gomila M, Moore ERB, Spilker T, LiPuma JJInt J Syst Evol Microbiol10.1099/ijsem.0.0008722016Achromobacter/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Multilocus Sequence Typing, *Phylogeny, Sequence Analysis, DNATranscriptome
Phylogeny28551873Achromobacter panacis sp. nov., isolated from rhizosphere of Panax ginseng.Singh P, Kim YJ, Singh H, Farh ME, Yang DCJ Microbiol10.1007/s12275-017-6612-32017*Achromobacter/classification/genetics/isolation & purification, Base Composition/genetics, DNA, Bacterial/genetics, Fatty Acids/analysis, Panax/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhizosphere, Sequence Analysis, DNA, Soil MicrobiologyTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43665Peter A. Vandamme, Charlotte Peeters, Margo Cnockaert, Margarita Gomila, Edward R. B. Moore, Theodore Spilker, John J. LiPumaReclassification of Achromobacter spiritinus Vandamme et al. 2013 as a later heterotypic synonym of Achromobacter marplatensis Gomila et al. 201110.1099/ijsem.0.000872IJSEM 66: 1641-1644 201626738485
60931Curators of the CCUGhttps://www.ccug.se/strain?id=56371Culture Collection University of Gothenburg (CCUG) (CCUG 56371)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
96800Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID374759.1
120842Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110817Collection of Institut Pasteur (CIP 110817)