Strain identifier

BacDive ID: 14085

Type strain: Yes

Species: Shewanella corallii

Strain Designation: F5, fav-2-10-05

Strain history: CIP <- 2010, DSMZ <- M. Shnit-Orland, Ben-Gurion-Univ., Beer-Sheva, Israel: strain fav-2-10-05

NCBI tax ID(s): 560080 (species)

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General

@ref: 15619

BacDive-ID: 14085

DSM-Number: 21332

keywords: genome sequence, 16S sequence, Bacteria, facultative aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Shewanella corallii F5 is a facultative aerobe, mesophilic, Gram-negative bacterium that was isolated from coral mucus layer of Favia sp..

NCBI tax id

  • NCBI tax id: 560080
  • Matching level: species

strain history

@refhistory
404022010, DSMZ
15619<- M. Shnit-Orland, Ben-Gurion-Univ., Beer-Sheva, Israel; fav-2-10-05
118748CIP <- 2010, DSMZ <- M. Shnit-Orland, Ben-Gurion-Univ., Beer-Sheva, Israel: strain fav-2-10-05

doi: 10.13145/bacdive14085.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella corallii
  • full scientific name: Shewanella corallii Shnit-Orland et al. 2010

@ref: 15619

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella corallii

full scientific name: Shewanella corallii Shnit-Orland et al. 2010

strain designation: F5, fav-2-10-05

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29553negative2 µm0.8-1 µmrod-shapedyes
118748negativerod-shapedyes

pigmentation

  • @ref: 29553
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15619BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
40402Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
118748CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
15619positivegrowth26mesophilic
29553positivegrowth10-37
29553positiveoptimum26mesophilic
40402positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29553facultative aerobe
118748obligate aerobe

spore formation

  • @ref: 29553
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29553NaClpositivegrowth0.5-8 %
29553NaClpositiveoptimum0.5-6 %

observation

  • @ref: 29553
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2955317306maltose+carbon source
29553506227N-acetylglucosamine+carbon source
11874817632nitrate+reduction
11874816301nitrite-reduction

metabolite production

  • @ref: 118748
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
29553catalase+1.11.1.6
29553cytochrome oxidase+1.9.3.1
118748oxidase+
118748catalase+1.11.1.6
118748urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118748-+++-----+++-----+--

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitude
15619coral mucus layer of Favia sp.FaviaRed Sea, Gulf of Eilat, coral reef (29°51 'N, 34°94 'E)IsraelISRAsia29.37234.884
118748Coral of genus Favia, muculusGulf of EilatIsraelISRAsia

isolation source categories

Cat1Cat2Cat3
#Host#Invertebrates (Other)#Cnidaria (Corals)
#Host Body Product#Oral cavity and Airways#Mucus

taxonmaps

  • @ref: 69479
  • File name: preview.99_21265.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_10775;97_13035;98_16038;99_21265&stattab=map
  • Last taxonomy: Shewanella corallii subclade
  • 16S sequence: FJ041083
  • Sequence Identity:
  • Total samples: 461
  • soil counts: 2
  • aquatic counts: 387
  • animal counts: 72

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
156191Risk group (German classification)
1187481Risk group (French classification)

Sequence information

16S sequences

  • @ref: 15619
  • description: Alteromonadales bacterium fav-2-10-05 16S ribosomal RNA gene, partial sequence
  • accession: FJ041083
  • length: 1481
  • database: ena
  • NCBI tax ID: 560080

Genome sequences

  • @ref: 66792
  • description: Shewanella corallii DSM 21332
  • accession: GCA_023349125
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 560080

GC content

@refGC-contentmethod
1561949.1high performance liquid chromatography (HPLC)
2955349.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes85.417no
gram-positiveno99.091no
anaerobicno97.132yes
aerobicyes53.547yes
halophileyes51.219no
spore-formingno96.772no
motileyes94.458yes
glucose-fermentno55.922no
thermophileno99.282no
glucose-utilyes90.504no

External links

@ref: 15619

culture collection no.: DSM 21332, CIP 110229, LMG 24563

straininfo link

  • @ref: 83254
  • straininfo: 343772

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19915103Shewanella corallii sp. nov., a marine bacterium isolated from a Red Sea coral.Shnit-Orland M, Sivan A, Kushmaro AInt J Syst Evol Microbiol10.1099/ijs.0.015768-02009Animals, Anthozoa/*microbiology, Antibiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella, Indian Ocean, Israel, Locomotion, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Shewanella/*classification/genetics/*isolation & purification/physiology, Sodium Chloride/metabolismGenetics
Phylogeny30499770Shewanella submarina sp. nov., a gammaproteobacterium isolated from marine water.Sudha Rani P, Saini MK, Pinnaka AK, Sampath Kumar G, Kumar S, Vemuluri VR, Tanuku NRSInt J Syst Evol Microbiol10.1099/ijsem.0.0030592018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Shewanella/*classification/isolation & purificationTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15619Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21332)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21332
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29553Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2594828776041
40402Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8065
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83254Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID343772.1StrainInfo: A central database for resolving microbial strain identifiers
118748Curators of the CIPCollection of Institut Pasteur (CIP 110229)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110229