Strain identifier

BacDive ID: 140842

Type strain: Yes

Species: Thermosporothrix narukonensis

Strain Designation: F4

NCBI tax ID(s): 1445971 (species)

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General

@ref: 43645

BacDive-ID: 140842

keywords: 16S sequence, Bacteria, aerobe, heterotroph, spore-forming, Gram-positive

description: Thermosporothrix narukonensis F4 is an aerobe, heterotroph, spore-forming bacterium that was isolated from fallen leaves deposited on steaming soil from Jigokudani geothermal area.

NCBI tax id

  • NCBI tax id: 1445971
  • Matching level: species

doi: 10.13145/bacdive140842.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/chloroflexota
  • domain: Bacteria
  • phylum: Chloroflexota
  • class: Ktedonobacteria
  • order: Ktedonobacterales
  • family: Thermosporotrichaceae
  • genus: Thermosporothrix
  • species: Thermosporothrix narukonensis
  • full scientific name: Thermosporothrix narukonensis Yabe et al. 2016

@ref: 43645

domain: Bacteria

phylum: Chloroflexi

class: Ktedonobacteria

order: Ktedonobacterales

family: Thermosporotrichaceae

genus: Thermosporothrix

species: Thermosporothrix narukonensis

strain designation: F4

type strain: yes

Morphology

cell morphology

  • @ref: 43645
  • gram stain: positive

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
43645positivegrowth30-60
43645positiveoptimum50thermophilic

culture pH

@refabilitytypepHPH range
43645positivegrowth4.9-9.5alkaliphile
43645positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43645
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 43645
  • type: heterotroph

spore formation

  • @ref: 43645
  • spore description: oval in shape with a rough surface and not motile
  • type of spore: spore
  • spore formation: yes

halophily

  • @ref: 43645
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4364515824D-fructose-carbon source
4364516899D-mannitol-carbon source
4364517992sucrose-carbon source
43645casein-hydrolysis
4364517634D-glucose+carbon source
4364565327D-xylose+carbon source
4364517268myo-inositol+carbon source
4364530849L-arabinose+carbon source
4364562345L-rhamnose+carbon source
4364516634raffinose+carbon source
4364562968cellulose+hydrolysis
4364585146carboxymethylcellulose+hydrolysis
4364517029chitin+hydrolysis
436455291gelatin+hydrolysis
4364528017starch+hydrolysis
4364537166xylan+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4364528971ampicillinyesyes10 µg
4364517076streptomycinyesyes10 µg
4364527902tetracyclineyesyes10 µg
4364528001vancomycinyesyes10 µg
4364528669bacitracinyesyes10 µg
4364517698chloramphenicolyesyes10 µg
436456104kanamycinyesyes100 µg
43645100147nalidixic acidyesyes100 µg

enzymes

  • @ref: 43645
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

  • @ref: 43645
  • sample type: fallen leaves deposited on steaming soil from Jigokudani geothermal area
  • geographic location: Onikobe, Naruko hot springs, Miyagi Prefecture
  • country: Japan
  • origin.country: JPN
  • continent: Asia
  • latitude: 38.805
  • longitude: 140.673
  • isolation date: 2013-06-28

isolation source categories

Cat1Cat2Cat3
#Condition#Thermophilic (>45°C)
#Environmental#Terrestrial#Soil
#Host Body-Site#Plant#Leaf (Phyllosphere)

taxonmaps

  • @ref: 69479
  • File name: preview.99_110765.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10199;96_44299;97_56736;98_75175;99_110765&stattab=map
  • Last taxonomy: Thermosporothrix narukonensis
  • 16S sequence: AB900623
  • Sequence Identity:
  • Total samples: 233
  • soil counts: 189
  • aquatic counts: 9
  • animal counts: 10
  • plant counts: 25

Sequence information

16S sequences

  • @ref: 43645
  • description: 16S rRNA gene sequence
  • accession: AB900623
  • database: nuccore

GC content

  • @ref: 43645
  • GC-content: 52.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43645

culture collection no.: NBRC 111777, BCCM/LMG 29329

literature

  • topic: Phylogeny
  • Pubmed-ID: 26961584
  • title: Thermosporothrix narukonensis sp. nov., belonging to the class Ktedonobacteria, isolated from fallen leaves on geothermal soil, and emended description of the genus Thermosporothrix.
  • authors: Yabe S, Sakai Y, Yokota A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001004
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Chloroflexi/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Leaves/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43645Shuhei Yabe, Yasuteru Sakai, Akira YokotaThermosporothrix narukonensis sp. nov., belonging to the class Ktedonobacteria, isolated from fallen leaves on geothermal soil, and emended description of the genus Thermosporothrix10.1099/ijsem.0.001004IJSEM 66: 2152-2157 201626961584
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/