Strain identifier

BacDive ID: 140828

Type strain: Yes

Species: Roseivirga maritima

Strain Designation: GM-5

Strain history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.

NCBI tax ID(s): 1817404 (species)

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General

@ref: 43622

BacDive-ID: 140828

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Roseivirga maritima GM-5 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from seawater from Geumgang Estuary Bank.

NCBI tax id

  • NCBI tax id: 1817404
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.

doi: 10.13145/bacdive140828.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Roseivirgaceae
  • genus: Roseivirga
  • species: Roseivirga maritima
  • full scientific name: Roseivirga maritima Jung et al. 2016

@ref: 43622

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Flammeovirgaceae

genus: Roseivirga

species: Roseivirga maritima

strain designation: GM-5

type strain: yes

Morphology

cell morphology

  • @ref: 43622
  • gram stain: negative
  • cell length: 1-2 µm
  • cell width: 0.5-0.8 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43622
  • colony size: 0.2-1 mm
  • colony color: reddish orange
  • colony shape: circular
  • incubation period: 5 days
  • medium used: MA agar

pigmentation

  • @ref: 43622
  • production: no
  • name: Flexirubin-type

Culture and growth conditions

culture medium

  • @ref: 43622
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43622positivegrowth4-32
43622positiveoptimum25mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
43622positivegrowth5.5-8
43622positiveoptimum7-8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43622aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
43622NaClpositivegrowth0.5-4 %(w/v)
43622NaClpositiveoptimum2 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4362217057cellobiose-builds acid from
4362215824D-fructose-builds acid from
4362212936D-galactose-builds acid from
4362216899D-mannitol-builds acid from
4362216024D-mannose-builds acid from
436226731melezitose-builds acid from
4362216634raffinose-builds acid from
4362216988D-ribose-builds acid from
4362217924D-sorbitol-builds acid from
4362216551D-trehalose-builds acid from
4362265327D-xylose-builds acid from
4362230849L-arabinose-builds acid from
4362262345L-rhamnose-builds acid from
4362217306maltose-builds acid from
4362217268myo-inositol-builds acid from
4362217992sucrose-builds acid from
4362230089acetate-carbon source
4362216150benzoate-carbon source
4362216947citrate-carbon source
4362217057cellobiose-carbon source
4362215824D-fructose-carbon source
4362212936D-galactose-carbon source
4362217634D-glucose-carbon source
4362216024D-mannose-carbon source
4362216551D-trehalose-carbon source
4362265327D-xylose-carbon source
4362215740formate-carbon source
4362230849L-arabinose-carbon source
4362229985L-glutamate-carbon source
4362215589L-malate-carbon source
4362217306maltose-carbon source
4362215361pyruvate-carbon source
4362217814salicin-carbon source
4362230031succinate-carbon source
4362217992sucrose-carbon source
4362230089acetate-energy source
4362216150benzoate-energy source
4362216947citrate-energy source
4362217057cellobiose-energy source
4362215824D-fructose-energy source
4362212936D-galactose-energy source
4362217634D-glucose-energy source
4362216024D-mannose-energy source
4362216551D-trehalose-energy source
4362265327D-xylose-energy source
4362215740formate-energy source
4362230849L-arabinose-energy source
4362229985L-glutamate-energy source
4362215589L-malate-energy source
4362217306maltose-energy source
4362215361pyruvate-energy source
4362217814salicin-energy source
4362230031succinate-energy source
4362217992sucrose-energy source
436224853esculin-hydrolysis
436225291gelatin-hydrolysis
4362217368hypoxanthine-hydrolysis
4362253424tween 20-hydrolysis
4362253423tween 40-hydrolysis
4362253425tween 60-hydrolysis
4362253426tween 80-hydrolysis
4362218186tyrosine-hydrolysis
4362216199urea-hydrolysis
4362215318xanthine-hydrolysis
4362217634D-glucose+builds acid from
4362217716lactose+builds acid from
4362228053melibiose+builds acid from
43622casein+hydrolysis
4362228017starch+hydrolysis
4362217632nitrate+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
436223542cephalothinyesyes30 µg (disc)
4362217698chloramphenicolyesyes100 µg (disc)
436226472lincomycinyesyes15 µg (disc)
4362228368novobiocinyesyes5 µg (disc)
4362216869oleandomycinyesyes15 µg (disc)
4362227902tetracyclineyesyes30 µg (disc)
4362228971ampicillinyesyes10 µg (disc)
436223393carbenicillinyesyes100 µg (disc)
4362217833gentamicinyesyes30 µg (disc)
436226104kanamycinyesyes30 µg (disc)
436227507neomycinyesyes30 µg (disc)
4362217076streptomycinyesyes50 µg (disc)
4362218208penicillin gyesyes20 Unit (disc)
436228309polymyxin byesyes100 Unit (disc)

metabolite production

  • @ref: 43622
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
43622catalase+1.11.1.6
43622cytochrome oxidase+1.9.3.1
43622alkaline phosphatase+3.1.3.1
43622esterase (C 4)+
43622esterase Lipase (C 8)+
43622leucine arylamidase+3.4.11.1
43622valine arylamidase+
43622cystine arylamidase+3.4.11.3
43622trypsin+3.4.21.4
43622alpha-chymotrypsin+3.4.21.1
43622acid phosphatase+3.1.3.2
43622naphthol-AS-BI-phosphohydrolase+
43622alpha-glucosidase+3.2.1.20
43622N-acetyl-beta-glucosaminidase+3.2.1.52
43622lipase (C 14)-
43622alpha-galactosidase-3.2.1.22
43622beta-galactosidase-3.2.1.23
43622beta-glucuronidase-3.2.1.31
43622beta-glucosidase-3.2.1.21
43622alpha-mannosidase-3.2.1.24
43622alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43622C17:0 anteiso6.8
    43622C16:014.9
    43622C16:1ω6c / C16:1ω7c5.9
    43622C15:0 iso9
    43622C16:0 iso6.7
  • type of FA analysis: whole cell analysis
  • incubation medium: MA plates
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 5
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.2
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43622seawater from Geumgang Estuary BankGuryongpoRepublic of KoreaKORAsia35.996129.565
67771From Guryongpo seawaterGeumgang Estuary BankRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Estuary
#Environmental#Aquatic#Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_10582.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_492;96_2388;97_6316;98_7881;99_10582&stattab=map
  • Last taxonomy: Roseivirga
  • 16S sequence: KU507204
  • Sequence Identity:
  • Total samples: 1389
  • soil counts: 32
  • aquatic counts: 1350
  • animal counts: 7

Sequence information

16S sequences

  • @ref: 43622
  • description: 16S rRNA gene sequence
  • accession: KU507204
  • database: nuccore

GC content

  • @ref: 43622
  • GC-content: 42.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43622

culture collection no.: KCTC 42718, NBRC 111589

literature

  • topic: Phylogeny
  • Pubmed-ID: 27098751
  • title: Roseivirga maritima sp. nov., isolated from seawater.
  • authors: Jung YT, Park S, Lee JS, Yoon JH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001102
  • year: 2016
  • mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43622Yong-Taek Jung, Sooyeon Park, Jung-Sook Lee, Jung-Hoon YoonRoseivirga maritima sp. nov., isolated from seawater10.1099/ijsem.0.001102IJSEM 66: 2664-2670 201627098751
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/