Strain identifier

BacDive ID: 140793

Type strain: Yes

Species: Sphingobacterium corticis

Strain Designation: 23D10-4-9

Strain history: <- Yong Li, Dongxiaoful, Haidian district, Beijing, China

NCBI tax ID(s): 1812823 (species)

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General

@ref: 43571

BacDive-ID: 140793

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Sphingobacterium corticis 23D10-4-9 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from canker bark tissue of Populus x euramericana.

NCBI tax id

  • NCBI tax id: 1812823
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Yong Li, Dongxiaoful, Haidian district, Beijing, China

doi: 10.13145/bacdive140793.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Sphingobacteriia
  • order: Sphingobacteriales
  • family: Sphingobacteriaceae
  • genus: Sphingobacterium
  • species: Sphingobacterium corticis
  • full scientific name: Sphingobacterium corticis Li et al. 2017

@ref: 43571

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Sphingobacterium

species: Sphingobacterium corticis

strain designation: 23D10-4-9

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
43571negative1.5 µm0.76 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 43571
  • colony size: 2 mm
  • colony color: Pale yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: TSA agar

Culture and growth conditions

culture medium

  • @ref: 43571
  • name: Trypticase Soy Agar (TSA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43571positivegrowth4-35
43571positiveoptimum25mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43571positivegrowth6-11alkaliphile
43571positiveoptimum7-8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43571aerobe
67771aerobe

halophily

  • @ref: 43571
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %(w/v)

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4357116947citrate-assimilation
4357127613amygdalin-builds acid from
4357115963ribitol-builds acid from
4357117108D-arabinose-builds acid from
4357118333D-arabitol-builds acid from
4357128847D-fucose-builds acid from
4357162318D-lyxose-builds acid from
4357116899D-mannitol-builds acid from
4357116988D-ribose-builds acid from
4357117924D-sorbitol-builds acid from
4357116443D-tagatose-builds acid from
4357165327D-xylose-builds acid from
4357116813galactitol-builds acid from
4357117113erythritol-builds acid from
4357128066gentiobiose-builds acid from
4357117754glycerol-builds acid from
4357128087glycogen-builds acid from
4357117268myo-inositol-builds acid from
4357115443inulin-builds acid from
4357130849L-arabinose-builds acid from
4357118287L-fucose-builds acid from
4357162345L-rhamnose-builds acid from
4357117266L-sorbose-builds acid from
4357165328L-xylose-builds acid from
435716731melezitose-builds acid from
4357128053melibiose-builds acid from
4357174863methyl beta-D-xylopyranoside-builds acid from
43571potassium 2-dehydro-D-gluconate-builds acid from
43571potassium 5-dehydro-D-gluconate-builds acid from
4357132032potassium gluconate-builds acid from
4357116634raffinose-builds acid from
4357128017starch-builds acid from
4357117992sucrose-builds acid from
4357127082trehalose-builds acid from
4357132528turanose-builds acid from
4357117151xylitol-builds acid from
4357117632nitrate-reduction
4357127613amygdalin+builds acid from
4357118305arbutin+builds acid from
4357117057cellobiose+builds acid from
4357115824D-fructose+builds acid from
4357112936D-galactose+builds acid from
4357117634D-glucose+builds acid from
4357116024D-mannose+builds acid from
43571esculin ferric citrate+builds acid from
4357117716lactose+builds acid from
43571maltose hydrate+builds acid from
43571320061methyl alpha-D-glucopyranoside+builds acid from
4357143943methyl alpha-D-mannoside+builds acid from
43571506227N-acetylglucosamine+builds acid from
4357117814salicin+builds acid from
4357117925alpha-D-glucose+respiration
4357117057cellobiose+respiration
4357115824D-fructose+respiration
4357112936D-galactose+respiration
4357114314D-glucose 6-phosphate+respiration
4357116024D-mannose+respiration
4357123652dextrin+respiration
4357128066gentiobiose+respiration
4357130849L-arabinose+respiration
4357116857L-threonine+respiration
4357117716lactose+respiration
4357117306maltose+respiration
4357128053melibiose+respiration
4357137657methyl D-glucoside+respiration
4357151850methyl pyruvate+respiration
43571506227N-acetylglucosamine+respiration
4357117992sucrose+respiration
4357127082trehalose+respiration
4357132528turanose+respiration

metabolite production

@refChebi-IDmetaboliteproduction
4357116136hydrogen sulfideno
4357135581indoleno
4357115688acetoinyes

enzymes

@refvalueactivityec
43571catalase+1.11.1.6
43571cytochrome oxidase-1.9.3.1
43571arginine dihydrolase-3.5.3.6
43571lysine decarboxylase-4.1.1.18
43571ornithine decarboxylase-4.1.1.17
43571urease-3.5.1.5
43571tryptophan deaminase-4.1.99.1
43571gelatinase-
43571alkaline phosphatase+3.1.3.1
43571esterase (C 4)+
43571esterase Lipase (C 8)+
43571leucine arylamidase+3.4.11.1
43571trypsin+3.4.21.4
43571alpha-chymotrypsin+3.4.21.1
43571acid phosphatase+3.1.3.2
43571naphthol-AS-BI-phosphohydrolase+
43571alpha-galactosidase+3.2.1.22
43571beta-galactosidase+3.2.1.23
43571alpha-glucosidase+3.2.1.20
43571beta-glucosidase+3.2.1.21
43571N-acetyl-beta-glucosaminidase+3.2.1.52
43571alpha-mannosidase+3.2.1.24

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
43571canker bark tissue of Populus x euramericanaQingfeng, Puyang City, Henan provinceChinaCHNAsia2013-08
67771From symptomatic canker bark tissue of `Populus × euramericana`Qingfeng, Puyang City, Henan ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Bark

Sequence information

16S sequences

  • @ref: 43571
  • description: 16S rRNA gene sequence
  • accession: KT988033
  • database: nuccore

GC content

@refGC-contentmethod
4357140.6high performance liquid chromatography (HPLC)
6777140.6

External links

@ref: 43571

culture collection no.: CFCC 12640, KCTC 42248, CFCC 12460

literature

  • topic: Phylogeny
  • Pubmed-ID: 28884658
  • title: Sphingobacterium corticis sp. nov., isolated from bark of Populus x euramericana.
  • authors: Li Y, Xu GT, Chang JP, Guo LM, Yang XQ, Piao CG
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002210
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Bark/*microbiology, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sphingobacterium/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry, beta-Galactosidase/metabolism, beta-Glucosidase/metabolism
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43571Yong Li, Guan-tang Xu, Ju-pu Chang, Li-min Guo, Xu-qi Yang, Chun-gen PiaoSphingobacterium corticis sp. nov., isolated from bark of Populus × euramericana10.1099/ijsem.0.002210IJSEM 67: 3860-3864 201728884658
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc