Strain identifier

BacDive ID: 140776

Type strain: Yes

Species: Marivibrio halodurans

Strain Designation: ZC80

NCBI tax ID(s): 2039722 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 43554

BacDive-ID: 140776

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative, motile, pleomorphic-shaped, colony-forming

description: Marivibrio halodurans ZC80 is an anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from rock salt samples from the Yunnan salt mine.

NCBI tax id

  • NCBI tax id: 2039722
  • Matching level: species

doi: 10.13145/bacdive140776.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Kiloniellaceae
  • genus: Marivibrio
  • species: Marivibrio halodurans
  • full scientific name: Marivibrio halodurans Chen et al. 2017

@ref: 43554

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Rhodospirillaceae

genus: Marivibrio

species: Marivibrio halodurans

strain designation: ZC80

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
43554negative2.8-4.2 µm0.3-0.4 µmpleomorphic-shapedyesmonotrichous, polar
69480negative99.984

colony morphology

  • @ref: 43554
  • colony size: 2.8-4.2 mm
  • colony color: glistening beige
  • colony shape: circular
  • incubation period: 5 days
  • medium used: MA agar

Culture and growth conditions

culture medium

  • @ref: 43554
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43554positivegrowth10-50
43554positiveoptimum37mesophilic

culture pH

@refabilitytypepHPH range
43554positivegrowth6-10alkaliphile
43554positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43554
  • oxygen tolerance: anaerobe

spore formation

@refspore formationconfidence
69481no90
69480no99.976

halophily

@refsaltgrowthtested relationconcentration
43554NaClpositivegrowth2-15 %(w/v)
43554NaClpositiveoptimum5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4355417057cellobiose-carbon source
4355415740formate-carbon source
4355417814salicin-carbon source
4355417992sucrose-carbon source
4355417057cellobiose-energy source
4355415740formate-energy source
4355417814salicin-energy source
4355417992sucrose-energy source
43554casein-hydrolysis
435544853esculin-hydrolysis
435545291gelatin-hydrolysis
4355417895L-tyrosine-hydrolysis
4355428017starch-hydrolysis
4355453424tween 20-hydrolysis
4355453423tween 40-hydrolysis
4355453425tween 60-hydrolysis
4355453426tween 80-hydrolysis
4355416199urea-hydrolysis
4355430089acetate+carbon source
4355416150benzoate+carbon source
4355416947citrate+carbon source
4355415824D-fructose+carbon source
4355412936D-galactose+carbon source
4355417634D-glucose+carbon source
4355416024D-mannose+carbon source
4355465327D-xylose+carbon source
4355430849L-arabinose+carbon source
4355429985L-glutamate+carbon source
4355415589L-malate+carbon source
4355417306maltose+carbon source
4355415361pyruvate+carbon source
4355430031succinate+carbon source
4355427082trehalose+carbon source
4355430089acetate+energy source
4355416150benzoate+energy source
4355416947citrate+energy source
4355415824D-fructose+energy source
4355412936D-galactose+energy source
4355417634D-glucose+energy source
4355416024D-mannose+energy source
4355465327D-xylose+energy source
4355430849L-arabinose+energy source
4355429985L-glutamate+energy source
4355415589L-malate+energy source
4355417306maltose+energy source
4355415361pyruvate+energy source
4355430031succinate+energy source
4355427082trehalose+energy source
4355417632nitrate+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4355417698chloramphenicolyesyes30 µg (disc)
4355417833gentamicinyesyes20 µg (disc)
435542676amoxicillinyesyes10 µg (disc)
43554474053cefazolinyesyes30 µg (disc)
43554204928cefotaximeyesyes30 µg (disc)
435543515cefuroximeyesyes30 µg (disc)
4355418208penicillin gyesyes10 µg (disc)
435543393carbenicillinyesyes100 µg (disc)
435546104kanamycinyesyes30 µg (disc)
4355417076streptomycinyesyes10 µg (disc)
4355427902tetracyclineyesyes20 µg (disc)
4355428971ampicillinyesyes10 µg (disc)
435547507neomycinyesyes30 µg (disc)
435548309polymyxin byesyes30 µg (disc)
4355448923erythromycinyesyes15 µg (disc)
4355428368novobiocinyesyes30 µg (disc)
43554100246norfloxacinyesyes10 µg (disc)
43554100147nalidixic acidyesyes30 µg (disc)
43554100241ciprofloxacinyesyes5 µg (disc)
4355428077rifampicinyesyes5 µg (disc)
4355448844roxithromycinyesyes15 µg (disc)
4355428864tobramycinyesyes10 µg (disc)
4355450845doxycyclineyesyes30 µg (disc)
4355428001vancomycinyesyes30 µg (disc)
435543493cefoperazoneyesyes30 µg (disc)
4355471415nitrofurantoinyesyes300 µg (disc)
43554116278lomefloxacinyesyes10 µg (disc)
4355428669bacitracinyesyes0.04 Unit (disc)
435542637amikacinyesyes30 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
4355435581indoleno
4355416136hydrogen sulfideyes

enzymes

@refvalueactivityec
43554alkaline phosphatase+3.1.3.1
43554esterase (C 4)+
43554esterase Lipase (C 8)+
43554leucine arylamidase+3.4.11.1
43554lipase (C 14)+
43554acid phosphatase+3.1.3.2
43554naphthol-AS-BI-phosphohydrolase+
43554valine arylamidase+
43554cystine arylamidase-3.4.11.3
43554trypsin-3.4.21.4
43554alpha-chymotrypsin-3.4.21.1
43554alpha-galactosidase-3.2.1.22
43554beta-galactosidase-3.2.1.23
43554beta-glucuronidase-3.2.1.31
43554alpha-glucosidase-3.2.1.20
43554beta-glucosidase-3.2.1.21
43554N-acetyl-beta-glucosaminidase-3.2.1.52
43554alpha-mannosidase-3.2.1.24
43554alpha-fucosidase-3.2.1.51
43554catalase+1.11.1.6

Isolation, sampling and environmental information

isolation

  • @ref: 43554
  • sample type: rock salt samples from the Yunnan salt mine
  • geographic location: Yunnan salt mine
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 23.872
  • longitude: 100.892

isolation source categories

Cat1Cat2Cat3
#Condition#Saline
#Environmental#Terrestrial#Geologic

Sequence information

16S sequences

  • @ref: 43554
  • description: 16S rRNA gene sequence
  • accession: KX376721
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marivibrio halodurans CGMCC 1.15697GCA_017963645contigncbi2039722
66792Marivibrio halodurans strain CGMCC 1.156972039722.4wgspatric2039722

GC content

  • @ref: 43554
  • GC-content: 60.8
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno90no
motileyes86.283yes
gram-positiveno98.808yes
anaerobicno96.771yes
aerobicyes84.261no
halophileyes60.219no
spore-formingno94.291no
glucose-utilyes61.905no
flagellatedyes66.234yes
thermophileno85.861no
glucose-fermentno91.498no

External links

@ref: 43554

culture collection no.: CGMCC 1.15697, NBRC 112461

literature

  • topic: Phylogeny
  • Pubmed-ID: 28920842
  • title: Marivibrio halodurans gen. nov., sp. nov., a marine bacterium in the family Rhodospirillaceae isolated from underground rock salt.
  • authors: Chen S, Xu Y, Zheng C, Ke LX
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002309
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Mining, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodospirillaceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, *Sodium Chloride, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43554Shaoxing Chen, Yao Xu, Chen Zheng, Li-Xia KeMarivibrio halodurans gen. nov., sp. nov., a marine bacterium in the family Rhodospirillaceae isolated from underground rock salt10.1099/ijsem.0.002309IJSEM 67: 4266-4271 201728920842
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1