Strain identifier

BacDive ID: 140774

Type strain: Yes

Species: Maribacter pelagius

Strain Designation: CBA3204

Strain history: S.-J. Lee CBA3204 <-- S. W. Roh.

NCBI tax ID(s): 1417663 (species)

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General

@ref: 43552

BacDive-ID: 140774

keywords: 16S sequence, Bacteria, obligate aerobe, Gram-negative, motile, coccus-shaped, colony-forming

description: Maribacter pelagius CBA3204 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from seawater from the region of Seongsanbong.

NCBI tax id

  • NCBI tax id: 1417663
  • Matching level: species

strain history

  • @ref: 67770
  • history: S.-J. Lee CBA3204 <-- S. W. Roh.

doi: 10.13145/bacdive140774.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Maribacter
  • species: Maribacter pelagius
  • full scientific name: Maribacter pelagius Jin et al. 2017

@ref: 43552

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Maribacter

species: Maribacter pelagius

strain designation: CBA3204

type strain: yes

Morphology

cell morphology

  • @ref: 43552
  • gram stain: negative
  • cell length: 0.4-0.6 µm
  • cell shape: coccus-shaped
  • motility: yes
  • flagellum arrangement: gliding

colony morphology

  • @ref: 43552
  • colony size: 1-2 mm
  • colony color: Orange
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA agar

Culture and growth conditions

culture medium

  • @ref: 43552
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperature
43552positivegrowth10-30
43552nogrowth35
43552positiveoptimum25-30
67770positivegrowth25

culture pH

@refabilitytypepHPH range
43552positivegrowth6.5-10alkaliphile
43552positiveoptimum7.5-8.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43552
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 43552
  • type of spore: endospore
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43552NaClnogrowth0-2 %(w/v)
43552NaClpositiveoptimum2-4 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4355227613amygdalin-builds acid from
4355222599arabinose-builds acid from
4355222605arabinitol-builds acid from
4355217057cellobiose-builds acid from
4355215963ribitol-builds acid from
4355215824D-fructose-builds acid from
4355212936D-galactose-builds acid from
4355217634D-glucose-builds acid from
4355262318D-lyxose-builds acid from
4355216899D-mannitol-builds acid from
4355216024D-mannose-builds acid from
4355216988D-ribose-builds acid from
4355217924D-sorbitol-builds acid from
4355216443D-tagatose-builds acid from
4355216813galactitol-builds acid from
4355217113erythritol-builds acid from
4355233984fucose-builds acid from
4355228066gentiobiose-builds acid from
4355224265gluconate-builds acid from
4355217754glycerol-builds acid from
4355228087glycogen-builds acid from
4355217268myo-inositol-builds acid from
4355215443inulin-builds acid from
4355262345L-rhamnose-builds acid from
4355217266L-sorbose-builds acid from
4355217716lactose-builds acid from
4355217306maltose-builds acid from
435526731melezitose-builds acid from
4355228053melibiose-builds acid from
4355243943methyl alpha-D-mannoside-builds acid from
4355274863methyl beta-D-xylopyranoside-builds acid from
4355237657methyl D-glucoside-builds acid from
43552506227N-acetylglucosamine-builds acid from
43552potassium 2-dehydro-D-gluconate-builds acid from
43552potassium 5-dehydro-D-gluconate-builds acid from
4355216634raffinose-builds acid from
4355217814salicin-builds acid from
4355228017starch-builds acid from
4355217992sucrose-builds acid from
4355227082trehalose-builds acid from
4355232528turanose-builds acid from
4355217151xylitol-builds acid from
4355218222xylose-builds acid from
4355217128adipate-carbon source
4355217634D-glucose-carbon source
4355216899D-mannitol-carbon source
4355216024D-mannose-carbon source
4355230849L-arabinose-carbon source
4355225115malate-carbon source
4355217306maltose-carbon source
43552506227N-acetylglucosamine-carbon source
4355218401phenylacetate-carbon source
4355232032potassium gluconate-carbon source
4355253258sodium citrate-carbon source
435525291gelatin-hydrolysis
4355228017starch-hydrolysis
435524853esculin+hydrolysis
4355217895L-tyrosine+hydrolysis
4355253423tween 40+hydrolysis
4355253426tween 80+hydrolysis
4355217632nitrate+reduction

metabolite production

  • @ref: 43552
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43552catalase+1.11.1.6
43552cytochrome oxidase-1.9.3.1
43552arginine dihydrolase-3.5.3.6
43552urease-3.5.1.5
43552gelatinase-
43552lipase (C 14)-
43552alpha-chymotrypsin-3.4.21.1
43552alpha-galactosidase-3.2.1.22
43552beta-glucuronidase-3.2.1.31
43552alpha-glucosidase-3.2.1.20
43552beta-glucosidase-3.2.1.21
43552alpha-mannosidase-3.2.1.24
43552alpha-fucosidase-3.2.1.51
43552alkaline phosphatase+3.1.3.1
43552esterase (C 4)+
43552esterase Lipase (C 8)+
43552leucine arylamidase+3.4.11.1
43552valine arylamidase+
43552cystine arylamidase+3.4.11.3
43552trypsin+3.4.21.4
43552acid phosphatase+3.1.3.2
43552naphthol-AS-BI-phosphohydrolase+
43552N-acetyl-beta-glucosaminidase+3.2.1.52
43552beta-galactosidase+3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43552C14:09.6
    43552C16:020.1
    43552C16:1ω7c / C15:0 iso 2OH15.4
    43552C17:1ω7c22.8
    43552C18:1ω9c11.5
  • type of FA analysis: whole cell analysis
  • incubation medium: MA
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 3
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.2
  • library/peak naming table: RTSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43552seawater from the region of SeongsanbongSeongsanbong, Jeju IslandRepublic of KoreaKORAsia33.46126.935
67770Seawater

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_50428.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_141;96_1222;97_1448;98_36246;99_50428&stattab=map
  • Last taxonomy: Maribacter pelagius subclade
  • 16S sequence: KF612587
  • Sequence Identity:
  • Total samples: 4
  • aquatic counts: 4

Sequence information

16S sequences

  • @ref: 43552
  • description: Maribacter pelagius strain CBA3204 16S ribosomal RNA gene, partial sequence
  • accession: KF612587
  • database: nuccore

GC content

  • @ref: 43552
  • GC-content: 35.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43552

culture collection no.: KACC 17671, JCM 19533

literature

  • topic: Phylogeny
  • Pubmed-ID: 28879842
  • title: Maribacter pelagius sp. nov., isolated from seawater.
  • authors: Jin M, Kim M, Kim JY, Song HS, Cha IT, Roh SW, Lee SJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002203
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43552Minwoo Jin, Minwook Kim, Joon Yong Kim, Hye Seon Song, In-Tae Cha, Seong Woon Roh, Sung-Jae LeeMaribacter pelagius sp. nov., isolated from seawater10.1099/ijsem.0.002203IJSEM 67: 3834-3839 201728879842
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/