Strain identifier

BacDive ID: 140773

Type strain: Yes

Species: Luteolibacter gellanilyticus

Strain Designation: CB-286403

Strain history: <- O. Genilloud and J. Pascual, Fundación Medina, Granada, Spain; CB-286403 <- J. Pascual

NCBI tax ID(s): 1639998 (species)

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General

@ref: 67691

BacDive-ID: 140773

DSM-Number: 28998

keywords: 16S sequence, Bacteria, aerobe, chemoorganoheterotroph, Gram-negative, rod-shaped, colony-forming

description: Luteolibacter gellanilyticus CB-286403 is an aerobe, chemoorganoheterotroph, Gram-negative bacterium that forms circular colonies and was isolated from Mediterranean forest soil, 972 m, above sea level.

NCBI tax id

  • NCBI tax id: 1639998
  • Matching level: species

strain history

  • @ref: 67691
  • history: <- O. Genilloud and J. Pascual, Fundación Medina, Granada, Spain; CB-286403 <- J. Pascual

doi: 10.13145/bacdive140773.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/verrucomicrobiota
  • domain: Bacteria
  • phylum: Verrucomicrobiota
  • class: Verrucomicrobiia
  • order: Verrucomicrobiales
  • family: Verrucomicrobiaceae
  • genus: Luteolibacter
  • species: Luteolibacter gellanilyticus
  • full scientific name: Luteolibacter gellanilyticus Pascual et al. 2017

@ref: 67691

domain: Bacteria

phylum: Verrucomicrobia

class: Verrucomicrobiae

order: Verrucomicrobiales

family: Verrucomicrobiaceae

genus: Luteolibacter

species: Luteolibacter gellanilyticus

full scientific name: Luteolibacter gellanilyticus Pascual et al. 2017

strain designation: CB-286403

type strain: yes

Morphology

cell morphology

  • @ref: 43551
  • gram stain: negative
  • cell length: 0.9-1.5 µm
  • cell width: 0.2-0.5 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43551
  • colony color: Lemon yellow
  • colony shape: circular
  • incubation period: 5 days
  • medium used: R2A-noble agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43551R2A-noble agaryes
67691R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperature
43551positivegrowth4-33
43551positiveoptimum25-28
67691positivegrowth25

culture pH

@refabilitytypepHPH range
43551positivegrowth6-9alkaliphile
43551positiveoptimum7-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43551
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 43551
  • type: chemoorganoheterotroph

halophily

@refsaltgrowthtested relationconcentrationhalophily level
43551NaClpositivegrowth0-1 %(w/v)
43551NaClpositiveoptimum0 %(w/v)non-halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4355117234glucose-fermentation
43551865372,2-dimethylsuccinic acid-growth
43551178364-aminobenzoate-growth
4355135680abietate-growth
4355115963ribitol-growth
4355158187alginate-growth
43551495055beta-cyclodextrin-growth
4355185146carboxymethylcellulose-growth
4355162968cellulose-growth
4355116947citrate-growth
4355117108D-arabinose-growth
4355115824D-fructose-growth
4355112936D-galactose-growth
4355117315D-glucosamine-growth
4355117634D-glucose-growth
4355114314D-glucose 6-phosphate-growth
4355115748D-glucuronate-growth
4355116899D-mannitol-growth
4355116988D-ribose-growth
4355117924D-sorbitol-growth
4355165327D-xylose-growth
4355128834deoxycholic acid-growth
4355185259diethylamine-growth
4355124996lactate-growth
4355116813galactitol-growth
435515291gelatin-growth
4355115428glycine-growth
4355116977L-alanine-growth
4355130849L-arabinose-growth
4355116467L-arginine-growth
4355117196L-asparagine-growth
4355129985L-glutamate-growth
4355115971L-histidine-growth
4355115603L-leucine-growth
4355118019L-lysine-growth
4355116643L-methionine-growth
4355117203L-proline-growth
4355162345L-rhamnose-growth
4355117115L-serine-growth
4355117266L-sorbose-growth
4355117895L-tyrosine-growth
435516364laminarin-growth
4355130313lipoate-growth
435516731melezitose-growth
4355128053melibiose-growth
43551506227N-acetylglucosamine-growth
4355146793polyethylene glycol-growth
4355117272propionate-growth
4355130031succinate-growth
4355127082trehalose-growth
4355127897tryptophan-growth
4355137166xylan-growth
43551620642,3-butanediol-oxidation
4355115895D-galactonic acid lactone-oxidation
435518391D-gluconate-oxidation
4355114314D-glucose 6-phosphate-oxidation
4355117924D-sorbitol-oxidation
4355117113erythritol-oxidation
4355115740formate-oxidation
4355130849L-arabinose-oxidation
4355118287L-fucose-oxidation
4355117716lactose-oxidation
435516359lactulose-oxidation
4355117306maltose-oxidation
4355128053melibiose-oxidation
4355151850methyl pyruvate-oxidation
4355175146monomethyl succinate-oxidation
43551506227N-acetylglucosamine-oxidation
4355116634raffinose-oxidation
4355117992sucrose-oxidation
4355127082trehalose-oxidation
4355117151xylitol-oxidation
4355117632nitrate-reduction
4355117634D-glucose+growth
4355116024D-mannose+growth
4355123652dextrin+growth
435514853esculin+growth
4355117754glycerol+growth
4355117295L-phenylalanine+growth
43551milk+growth
4355115361pyruvate+growth
4355128017starch+growth
4355117992sucrose+growth
4355127082trehalose+growth
4355117057cellobiose+oxidation
4355127605D-psicose+oxidation
4355123652dextrin+oxidation
4355117754glycerol+oxidation
4355137657methyl D-glucoside+oxidation
4355117057cellobiose+/-growth
4355117716lactose+/-growth
4355115443inulin+/-growth
4355117306maltose+/-growth
43551peptone+/-growth
4355116634raffinose+/-growth
43551yeast extract+/-growth
43551309162-oxoglutarate+/-oxidation
4355128066gentiobiose+/-oxidation
4355132528turanose+/-oxidation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
43551100246norfloxacinyesyes10 µg (disc)
435512637amikacinyesyes30 µg (disc)
435513393carbenicillinyesyes100 µg (disc)
435513508ceftazidimeyesyes30 µg (disc)
435513480cefamandoleyesyes30 µg (disc)
4355118208penicillin gyesyes2 Unit (disc)
4355128971ampicillinyesyes2 µg (disc)
4355128971ampicillinyesyes10 µg (disc)
435517809oxacillinyesyes5 µg (disc)

metabolite production

  • @ref: 43551
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43551catalase+1.11.1.6
43551cytochrome oxidase+1.9.3.1
43551beta-glucosidase+3.2.1.21
43551beta-galactosidase+3.2.1.23
43551alkaline phosphatase+3.1.3.1
43551acid phosphatase+3.1.3.2
43551esterase (C 4)+
43551naphthol-AS-BI-phosphohydrolase+
43551esterase Lipase (C 8)-
43551lipase (C 14)-
43551leucine arylamidase-3.4.11.1
43551valine arylamidase-
43551cystine arylamidase-3.4.11.3
43551trypsin-3.4.21.4
43551alpha-chymotrypsin-3.4.21.1
43551alpha-galactosidase-3.2.1.22
43551beta-glucuronidase-3.2.1.31
43551alpha-glucosidase-3.2.1.20
43551N-acetyl-beta-glucosaminidase-3.2.1.52
43551alpha-mannosidase-3.2.1.24
43551alpha-fucosidase-3.2.1.51
43551arginine dihydrolase-3.5.3.6
43551urease-3.5.1.5
43551gelatinase-

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43551C14:01.1
    43551C15:1ω6c2.9
    43551C16:01.1
    43551C16:0-10-methyl / iso-C17:1ω9c6.8
    43551C16:0 3OH1.3
    43551C16:1ω7c / C16:1ω6c9.8
    43551C15:0 iso26
    43551C15:0 iso 3OH5.1
    43551C15:1 iso G15.1
    43551C16:0 iso 3OH2.7
    43551C17:0 iso 3OH22.1
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A-noble agar
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 7
  • incubation_oxygen: aerobic
  • library/peak naming table: TSBA50
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43551Mediterranean forest soil, 972 m, above sea levelSierra de Tejeda, Almijara and Alhama Natural ParkSpainESPEurope36.909-3.864
67691Mediterranean forest soilGranada, Almijara and Alhama Natural Park, the Sierra de Tejeda (36° 54' 34.4'' N 3° 51' 52.9'' W, 972 m above sea-level)SpainESPEurope36.9096-3.8647

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 67691
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 43551
  • description: Luteolibacter sp. CB 286403 partial 16S rRNA gene, strain CB 286403
  • accession: LN833280
  • database: nuccore

External links

@ref: 67691

culture collection no.: CECT 8659, DSM 28998

straininfo link

  • @ref: 96788
  • straininfo: 405678

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28905697Luteolibacter gellanilyticus sp. nov., a gellan-gum-degrading bacterium of the phylum Verrucomicrobia isolated from miniaturized diffusion chambers.Pascual J, Garcia-Lopez M, Gonzalez I, Genilloud OInt J Syst Evol Microbiol10.1099/ijsem.0.0022272017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Phospholipids/chemistry, *Phylogeny, Polysaccharides, Bacterial/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spain, Verrucomicrobia/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny34623952Luteolibacter ambystomatis sp. nov., isolated from the skin of an Anderson's salamander (Ambystoma andersoni).Busse HJ, Kampfer P, Szostak MP, Spergser JInt J Syst Evol Microbiol10.1099/ijsem.0.0050432021*Ambystoma/microbiology, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Skin/*microbiology, Verrucomicrobia/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43551Javier Pascual, Marina García-López, Ignacio Gonzalez, Olga GenilloudLuteolibacter gellanilyticus sp. nov., a gellan-gum-degrading bacterium of the phylum Verrucomicrobia isolated from miniaturized diffusion chambers10.1099/ijsem.0.002227IJSEM 67: 3951-3959 201728905697
67691Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28998Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28998)
96788Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405678.1