Strain identifier

BacDive ID: 140760

Type strain: Yes

Species: Flavobacterium ardleyense

Strain Designation: A2-1

Strain history: <- Mingyang Zhou, Qilu Univ. of Technology

NCBI tax ID(s): 2038737 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43538

BacDive-ID: 140760

keywords: 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, rod-shaped, colony-forming

description: Flavobacterium ardleyense A2-1 is an aerobe, psychrophilic, Gram-negative bacterium that forms circular colonies and was isolated from From soil.

NCBI tax id

  • NCBI tax id: 2038737
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Mingyang Zhou, Qilu Univ. of Technology

doi: 10.13145/bacdive140760.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium ardleyense
  • full scientific name: Flavobacterium ardleyense Zhou et al. 2017

@ref: 43538

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium ardleyense

strain designation: A2-1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
43538negative1-5.2 µm0.3-0.5 µmrod-shapedno
67771rod-shaped
67771negative

colony morphology

  • @ref: 43538
  • colony size: 1-2 mm
  • colony color: Yellow
  • colony shape: circular
  • incubation period: 4 days
  • medium used: R2A agar

Culture and growth conditions

culture medium

  • @ref: 43538
  • name: Reasoner's 2A agar (R2A)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43538positivegrowth4-22psychrophilic
43538positiveoptimum10psychrophilic
67771positivegrowth15psychrophilic

culture pH

@refabilitytypepH
43538positivegrowth6-8
43538positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43538aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
43538NaClpositivegrowth0-1.5 %
43538NaClpositiveoptimum0.5 %

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4353817128adipate-assimilation
4353827689decanoate-assimilation
4353817634D-glucose-assimilation
4353816899D-mannitol-assimilation
4353816024D-mannose-assimilation
4353830849L-arabinose-assimilation
4353825115malate-assimilation
4353817306maltose-assimilation
43538506227N-acetylglucosamine-assimilation
4353818401phenylacetate-assimilation
4353832032potassium gluconate-assimilation
4353853258sodium citrate-assimilation
4353827897tryptophan-energy source
4353817234glucose-fermentation
4353816991dna-hydrolysis
4353828017starch-hydrolysis
4353853425tween 60-hydrolysis
4353853426tween 80-hydrolysis
4353817632nitrate-reduction
43538casein+hydrolysis
435384767elastin+hydrolysis
43538esculin ferric citrate+hydrolysis
435385291gelatin+hydrolysis
4353830089acetate+oxidation
4353813705acetoacetate+oxidation
4353816947citrate+oxidation
4353814314D-glucose 6-phosphate+oxidation
4353823652dextrin+oxidation
4353816537galactarate+oxidation
435385291gelatin+oxidation
4353870744glycine-proline+oxidation
4353829991L-aspartate+oxidation
4353829985L-glutamate+oxidation
4353853423tween 40+oxidation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
4353828077rifampicinyesyes5 µg (disc)
4353828971ampicillinyesyes10 µg (disc)
435387507neomycinyesyes30 µg (disc)
4353817698chloramphenicolyesyes30 µg (disc)
43538204928cefotaximeyesyes30 µg (disc)
4353871415nitrofurantoinyesyes300 µg (disc)
435383393carbenicillinyesyes100 µg (disc)
435388309polymyxin byesyes300 Unit (disc)

metabolite production

  • @ref: 43538
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 43538
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
43538catalase+1.11.1.6
43538cytochrome oxidase+1.9.3.1
43538alkaline phosphatase+3.1.3.1
43538esterase (C 4)+
43538esterase Lipase (C 8)+
43538leucine arylamidase+3.4.11.1
43538valine arylamidase+
43538acid phosphatase+3.1.3.2
43538naphthol-AS-BI-phosphohydrolase+
43538lipase (C 14)-
43538cystine arylamidase-3.4.11.3
43538trypsin-3.4.21.4
43538alpha-chymotrypsin-3.4.21.1
43538alpha-galactosidase-3.2.1.22
43538beta-glucuronidase-3.2.1.31
43538alpha-glucosidase-3.2.1.20
43538beta-glucosidase-3.2.1.21
43538N-acetyl-beta-glucosaminidase-3.2.1.52
43538alpha-mannosidase-3.2.1.24
43538alpha-fucosidase-3.2.1.51
43538tryptophan deaminase-4.1.99.1
43538urease-3.5.1.5
43538beta-galactosidase-3.2.1.23
43538arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43538C14:00.8
    43538C14:1ω5c0.5
    43538C15:01.5
    43538C16:038.7
    43538C16:1ω7c / C16:1ω6c42.7
    43538C17:00.6
    43538C18:1ω7c / C18:1ω6c10.2
    4353811-methyl C18:1ω7c1.1
    43538C19:0cycloω10c / C19:1ω6c0.5
    43538C8:0 3OH1.3
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A broth
  • agar/liquid: liquid
  • incubation temperature: 10
  • incubation time: 4
  • incubation_oxygen: aerobic
  • software version: Sherlock 4.5
  • library/peak naming table: TSBA40
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
67771From soilArdley Island, South Shetland Islands, AntarcticaAntarcticaATAAustralia and Oceania
43538soil sample collected on Ardley IslandSouth Shetland IslandsAntarcticaATAAustralia and Oceania-62.21-58.925

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_60524.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_644;97_12230;98_15044;99_60524&stattab=map
  • Last taxonomy: Flavobacterium ardleyense subclade
  • 16S sequence: KX911209
  • Sequence Identity:
  • Total samples: 294
  • soil counts: 20
  • aquatic counts: 251
  • animal counts: 20
  • plant counts: 3

Sequence information

16S sequences

  • @ref: 43538
  • description: 16S rRNA gene sequence
  • accession: KX911209
  • database: nuccore

GC content

@refGC-contentmethod
4353834thermal denaturation, midpoint method (Tm)
6777134.0

External links

@ref: 43538

culture collection no.: CCTCC AB 2017157, KCTC 52644

literature

  • topic: Phylogeny
  • Pubmed-ID: 28893368
  • title: Flavobacterium ardleyense sp. nov., isolated from Antarctic soil.
  • authors: Zhou MY, Zhang XY, Yang XD, Zhang YJ, He HL, Ning D
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002241
  • year: 2017
  • mesh: Antarctic Regions, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43538Ming-Yang Zhou, Xi-Ying Zhang, Xiao-Deng Yang, Yan-Jiao Zhang, Hai-Lun He, Daling NingFlavobacterium ardleyense sp. nov., isolated from Antarctic soil10.1099/ijsem.0.002241IJSEM 67: 3996-4001 201728893368
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/