Strain identifier
BacDive ID: 140746
Type strain:
Species: Alteromonas pelagimontana
Strain Designation: 5.12
NCBI tax ID(s): 1858656 (species)
General
@ref: 43523
BacDive-ID: 140746
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, coccus-shaped, colony-forming
description: Alteromonas pelagimontana 5.12 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from sediment sample collected from a ridge wall of the Southwest Indian Ridge.
NCBI tax id
- NCBI tax id: 1858656
- Matching level: species
doi: 10.13145/bacdive140746.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Alteromonas
- species: Alteromonas pelagimontana
- full scientific name: Alteromonas pelagimontana Sinha et al. 2017
@ref: 43523
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Alteromonas
species: Alteromonas pelagimontana
strain designation: 5.12
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell shape | motility | flagellum arrangement | confidence |
---|---|---|---|---|---|---|
43523 | negative | 0.7-0.8 µm | coccus-shaped | yes | polar | |
69480 | yes | 96.185 | ||||
69480 | negative | 99.965 |
colony morphology
- @ref: 43523
- colony size: 1-2 mm
- colony color: moderately yellow
- colony shape: circular
- incubation period: 2 days
- medium used: qsZMA
Culture and growth conditions
culture medium
- @ref: 43523
- name: qsZMA
- growth: yes
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43523 | positive | optimum | 35 | mesophilic |
43523 | positive | growth | 5-40 |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
43523 | positive | optimum | 6 | |
43523 | positive | growth | 6-10 | alkaliphile |
Physiology and metabolism
oxygen tolerance
- @ref: 43523
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
43523 | no | |
69481 | no | 100 |
69480 | no | 99.794 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
43523 | NaCl | positive | optimum | 3.5 %(w/v) |
43523 | NaCl | positive | growth | 0-10 %(w/v) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43523 | 17924 | D-sorbitol | - | builds acid from |
43523 | 16634 | raffinose | - | builds acid from |
43523 | 17992 | sucrose | - | builds acid from |
43523 | 27082 | trehalose | - | builds acid from |
43523 | 27689 | decanoate | - | carbon source |
43523 | 15740 | formate | - | carbon source |
43523 | 16467 | L-arginine | - | carbon source |
43523 | 29991 | L-aspartate | - | carbon source |
43523 | 18019 | L-lysine | - | carbon source |
43523 | 62968 | cellulose | - | hydrolysis |
43523 | 16991 | dna | - | hydrolysis |
43523 | 61995 | lecithin | - | hydrolysis |
43523 | 18186 | tyrosine | - | hydrolysis |
43523 | 22599 | arabinose | + | builds acid from |
43523 | 12936 | D-galactose | + | builds acid from |
43523 | 17634 | D-glucose | + | builds acid from |
43523 | 16899 | D-mannitol | + | builds acid from |
43523 | 16024 | D-mannose | + | builds acid from |
43523 | 65327 | D-xylose | + | builds acid from |
43523 | 16236 | ethanol | + | builds acid from |
43523 | 33984 | fucose | + | builds acid from |
43523 | 17716 | lactose | + | builds acid from |
43523 | 25097 | lyxose | + | builds acid from |
43523 | 17306 | maltose | + | builds acid from |
43523 | 6731 | melezitose | + | builds acid from |
43523 | 28053 | melibiose | + | builds acid from |
43523 | 18394 | palatinose | + | builds acid from |
43523 | 30089 | acetate | + | carbon source |
43523 | 17057 | cellobiose | + | carbon source |
43523 | 16947 | citrate | + | carbon source |
43523 | 17108 | D-arabinose | + | carbon source |
43523 | 15824 | D-fructose | + | carbon source |
43523 | 28847 | D-fucose | + | carbon source |
43523 | 12936 | D-galactose | + | carbon source |
43523 | 17634 | D-glucose | + | carbon source |
43523 | 16899 | D-mannitol | + | carbon source |
43523 | 16024 | D-mannose | + | carbon source |
43523 | 27605 | D-psicose | + | carbon source |
43523 | 16988 | D-ribose | + | carbon source |
43523 | 17924 | D-sorbitol | + | carbon source |
43523 | 65327 | D-xylose | + | carbon source |
43523 | 16236 | ethanol | + | carbon source |
43523 | 29806 | fumarate | + | carbon source |
43523 | 17234 | glucose | + | carbon source |
43523 | 17754 | glycerol | + | carbon source |
43523 | 15428 | glycine | + | carbon source |
43523 | 16977 | L-alanine | + | carbon source |
43523 | 30849 | L-arabinose | + | carbon source |
43523 | 15971 | L-histidine | + | carbon source |
43523 | 16643 | L-methionine | + | carbon source |
43523 | 62345 | L-rhamnose | + | carbon source |
43523 | 17266 | L-sorbose | + | carbon source |
43523 | 16414 | L-valine | + | carbon source |
43523 | 17716 | lactose | + | carbon source |
43523 | 25097 | lyxose | + | carbon source |
43523 | 15792 | malonate | + | carbon source |
43523 | 17306 | maltose | + | carbon source |
43523 | 6731 | melezitose | + | carbon source |
43523 | 28053 | melibiose | + | carbon source |
43523 | 17268 | myo-inositol | + | carbon source |
43523 | 506227 | N-acetylglucosamine | + | carbon source |
43523 | 18394 | palatinose | + | carbon source |
43523 | 17272 | propionate | + | carbon source |
43523 | 15361 | pyruvate | + | carbon source |
43523 | 16634 | raffinose | + | carbon source |
43523 | 17164 | stachyose | + | carbon source |
43523 | 28017 | starch | + | carbon source |
43523 | 30031 | succinate | + | carbon source |
43523 | 17992 | sucrose | + | carbon source |
43523 | 27082 | trehalose | + | carbon source |
43523 | 53424 | tween 20 | + | carbon source |
43523 | 53423 | tween 40 | + | carbon source |
43523 | 53426 | tween 80 | + | carbon source |
43523 | 2509 | agar | + | hydrolysis |
43523 | casein | + | hydrolysis | |
43523 | 5291 | gelatin | + | hydrolysis |
43523 | 28017 | starch | + | hydrolysis |
43523 | 17632 | nitrate | + | reduction |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | is resistant | resistance conc. |
---|---|---|---|---|---|---|---|
43523 | 2676 | amoxicillin | yes | yes | 25 µg (disc) | ||
43523 | 28971 | ampicillin | yes | yes | 10 µg (disc) | ||
43523 | 3393 | carbenicillin | yes | yes | 100 µg (disc) | ||
43523 | 204928 | cefotaxime | yes | yes | 30 µg (disc) | ||
43523 | 17698 | chloramphenicol | yes | yes | 30 µg (disc) | ||
43523 | 48923 | erythromycin | yes | yes | 15 µg (disc) | ||
43523 | 6104 | kanamycin | yes | yes | 30 µg (disc) | ||
43523 | 100147 | nalidixic acid | yes | yes | 30 µg (disc) | ||
43523 | 8309 | polymyxin b | yes | yes | 300 µg (disc) | ||
43523 | 28077 | rifampicin | yes | yes | 30 µg (disc) | ||
43523 | 17076 | streptomycin | yes | yes | 10 µg (disc) | ||
43523 | 28864 | tobramycin | yes | yes | 10 µg (disc) | ||
43523 | 45924 | trimethoprim | yes | yes | 5 µg (disc) | ||
43523 | 27902 | tetracycline | yes | yes | 30 µg (disc) | ||
43523 | 7507 | neomycin | yes | yes | 30 µg (disc) | ||
43523 | 28368 | novobiocin | yes | yes | 30 µg (disc) | ||
43523 | 18208 | penicillin g | yes | yes | 10 µg (disc) | ||
43523 | 17833 | gentamicin | yes | yes | 10 µg (disc) | ||
43523 | 28001 | vancomycin | yes | yes | 30 µg (disc) | ||
43523 | 71415 | nitrofurantoin | yes | yes | 300 µg (disc) |
metabolite production
- @ref: 43523
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
43523 | urease | + | 3.5.1.5 |
43523 | beta-galactosidase | + | 3.2.1.23 |
43523 | gelatinase | + | |
43523 | catalase | + | 1.11.1.6 |
43523 | cytochrome oxidase | + | 1.9.3.1 |
43523 | alpha-chymotrypsin | - | 3.4.21.1 |
43523 | trypsin | - | 3.4.21.4 |
43523 | alpha-glucosidase | - | 3.2.1.20 |
43523 | alpha-galactosidase | - | 3.2.1.22 |
43523 | cystine arylamidase | - | 3.4.11.3 |
43523 | alkaline phosphatase | + | 3.1.3.1 |
43523 | valine arylamidase | + | |
43523 | beta-glucosidase | + | 3.2.1.21 |
43523 | lipase (C 14) | +/- |
fatty acid profile
fatty acids
@ref fatty acid percentage 43523 C10:0 3OH 17.6 43523 C16:0 22 43523 C16:1ω7c / C15:0 iso 2OH 28.4 - type of FA analysis: whole cell analysis
- incubation medium: qsZMA plates
- agar/liquid: agar
- incubation temperature: 35
- incubation time: 2
- incubation pH: 6
- incubation_oxygen: aerobic
- software version: Sherlock 6.2B
- library/peak naming table: RTSBA6
- system: MIS MIDI
- cutoff value:
Isolation, sampling and environmental information
isolation
- @ref: 43523
- sample type: sediment sample collected from a ridge wall of the Southwest Indian Ridge
- geographic location: Indian Ocean
- country: Indian Ocean
- latitude: -26.941
- longitude: 67.324
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_6439.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_3046;97_3743;98_4751;99_6439&stattab=map
- Last taxonomy: Alteromonas pelagimontana
- 16S sequence: LT593862
- Sequence Identity:
- Total samples: 291
- soil counts: 35
- aquatic counts: 229
- animal counts: 21
- plant counts: 6
Sequence information
16S sequences
- @ref: 43523
- description: 16S rRNA gene sequence
- accession: LT593862
- database: nuccore
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Alteromonas pelagimontana 5.12 | GCA_002499975 | complete | ncbi | 1858656 |
66792 | Alteromonas pelagimontana 5.12 | 2791355104 | draft | img | 1858656 |
GC content
- @ref: 43523
- GC-content: 46.1
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 86.111 | yes |
flagellated | yes | 86.111 | yes |
gram-positive | no | 99.041 | yes |
gram-positive | no | 99.041 | yes |
anaerobic | no | 98.179 | no |
anaerobic | no | 98.179 | no |
aerobic | yes | 80.512 | yes |
aerobic | yes | 80.512 | yes |
halophile | yes | 54.765 | no |
halophile | yes | 54.765 | no |
spore-forming | no | 96.252 | no |
spore-forming | no | 96.252 | no |
thermophile | no | 99.539 | yes |
thermophile | no | 99.539 | yes |
glucose-util | yes | 94.171 | no |
glucose-util | yes | 94.171 | no |
motile | yes | 90.501 | yes |
motile | yes | 90.501 | yes |
glucose-ferment | no | 84.647 | no |
glucose-ferment | no | 84.647 | no |
External links
@ref: 43523
culture collection no.: LMG 29661, MCC 3250
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 28905702 | Alteromonas pelagimontana sp. nov., a marine exopolysaccharide-producing bacterium isolated from the Southwest Indian Ridge. | Sinha RK, Krishnan KP, Singh A, Thomas FA, Jain A, John Kurian P | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002245 | 2017 | Alteromonas/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Indian Ocean, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Genetics | 32665084 | Complete genome sequence of Alteromonas pelagimontana 5.12(T), a marine exopolysaccharide-producing bacterium isolated from hydrothermally influenced deep-sea sediment of eastern Southwest Indian Ridge. | Sinha RK, Krishnan KP, Kurian PJ | Mar Genomics | 10.1016/j.margen.2020.100804 | 2020 | Alteromonas/*genetics, *Genome, Bacterial, Geologic Sediments/*microbiology, Hydrothermal Vents/*microbiology, Indian Ocean, Polysaccharides/metabolism, Whole Genome Sequencing | Metabolism |
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
43523 | Rupesh Kumar Sinha, K. P. Krishnan, Archana Singh, Femi Anna Thomas, Anand Jain, P. John Kurian | Alteromonas pelagimontana sp. nov., a marine exopolysaccharide-producing bacterium isolated from the Southwest Indian Ridge | 10.1099/ijsem.0.002245 | IJSEM 67: 4032-4038 2017 | 28905702 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |