Strain identifier

BacDive ID: 140746

Type strain: Yes

Species: Alteromonas pelagimontana

Strain Designation: 5.12

NCBI tax ID(s): 1858656 (species)

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General

@ref: 43523

BacDive-ID: 140746

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, coccus-shaped, colony-forming

description: Alteromonas pelagimontana 5.12 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from sediment sample collected from a ridge wall of the Southwest Indian Ridge.

NCBI tax id

  • NCBI tax id: 1858656
  • Matching level: species

doi: 10.13145/bacdive140746.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Alteromonas
  • species: Alteromonas pelagimontana
  • full scientific name: Alteromonas pelagimontana Sinha et al. 2017

@ref: 43523

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Alteromonas

species: Alteromonas pelagimontana

strain designation: 5.12

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotilityflagellum arrangementconfidence
43523negative0.7-0.8 µmcoccus-shapedyespolar
125439negative98.2
125438negative100

colony morphology

  • @ref: 43523
  • colony size: 1-2 mm
  • colony color: moderately yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: qsZMA

Culture and growth conditions

culture medium

  • @ref: 43523
  • name: qsZMA
  • growth: yes

culture temp

@refgrowthtypetemperature
43523positiveoptimum35
43523positivegrowth5-40

culture pH

@refabilitytypepHPH range
43523positiveoptimum6
43523positivegrowth6-10alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
43523obligate aerobe
125439obligate aerobe99.5

spore formation

@refspore formationconfidence
43523no
125439no93.7

halophily

@refsaltgrowthtested relationconcentration
43523NaClpositiveoptimum3.5 %(w/v)
43523NaClpositivegrowth0-10 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4352317924D-sorbitol-builds acid from
4352316634raffinose-builds acid from
4352317992sucrose-builds acid from
4352327082trehalose-builds acid from
4352327689decanoate-carbon source
4352315740formate-carbon source
4352316467L-arginine-carbon source
4352329991L-aspartate-carbon source
4352318019L-lysine-carbon source
4352362968cellulose-hydrolysis
4352316991dna-hydrolysis
4352361995lecithin-hydrolysis
4352318186tyrosine-hydrolysis
4352322599arabinose+builds acid from
4352312936D-galactose+builds acid from
4352317634D-glucose+builds acid from
4352316899D-mannitol+builds acid from
4352316024D-mannose+builds acid from
4352365327D-xylose+builds acid from
4352316236ethanol+builds acid from
4352333984fucose+builds acid from
4352317716lactose+builds acid from
4352325097lyxose+builds acid from
4352317306maltose+builds acid from
435236731melezitose+builds acid from
4352328053melibiose+builds acid from
4352318394palatinose+builds acid from
4352330089acetate+carbon source
4352317057cellobiose+carbon source
4352316947citrate+carbon source
4352317108D-arabinose+carbon source
4352315824D-fructose+carbon source
4352328847D-fucose+carbon source
4352312936D-galactose+carbon source
4352317634D-glucose+carbon source
4352316899D-mannitol+carbon source
4352316024D-mannose+carbon source
4352327605D-psicose+carbon source
4352316988D-ribose+carbon source
4352317924D-sorbitol+carbon source
4352365327D-xylose+carbon source
4352316236ethanol+carbon source
4352329806fumarate+carbon source
4352317234glucose+carbon source
4352317754glycerol+carbon source
4352315428glycine+carbon source
4352316977L-alanine+carbon source
4352330849L-arabinose+carbon source
4352315971L-histidine+carbon source
4352316643L-methionine+carbon source
4352362345L-rhamnose+carbon source
4352317266L-sorbose+carbon source
4352316414L-valine+carbon source
4352317716lactose+carbon source
4352325097lyxose+carbon source
4352315792malonate+carbon source
4352317306maltose+carbon source
435236731melezitose+carbon source
4352328053melibiose+carbon source
4352317268myo-inositol+carbon source
43523506227N-acetylglucosamine+carbon source
4352318394palatinose+carbon source
4352317272propionate+carbon source
4352315361pyruvate+carbon source
4352316634raffinose+carbon source
4352317164stachyose+carbon source
4352328017starch+carbon source
4352330031succinate+carbon source
4352317992sucrose+carbon source
4352327082trehalose+carbon source
4352353424tween 20+carbon source
4352353423tween 40+carbon source
4352353426tween 80+carbon source
435232509agar+hydrolysis
43523casein+hydrolysis
435235291gelatin+hydrolysis
4352328017starch+hydrolysis
4352317632nitrate+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
435232676amoxicillinyesyes25 µg (disc)
4352328971ampicillinyesyes10 µg (disc)
435233393carbenicillinyesyes100 µg (disc)
43523204928cefotaximeyesyes30 µg (disc)
4352317698chloramphenicolyesyes30 µg (disc)
4352348923erythromycinyesyes15 µg (disc)
435236104kanamycinyesyes30 µg (disc)
43523100147nalidixic acidyesyes30 µg (disc)
435238309polymyxin byesyes300 µg (disc)
4352328077rifampicinyesyes30 µg (disc)
4352317076streptomycinyesyes10 µg (disc)
4352328864tobramycinyesyes10 µg (disc)
4352345924trimethoprimyesyes5 µg (disc)
4352327902tetracyclineyesyes30 µg (disc)
435237507neomycinyesyes30 µg (disc)
4352328368novobiocinyesyes30 µg (disc)
4352318208penicillin gyesyes10 µg (disc)
4352317833gentamicinyesyes10 µg (disc)
4352328001vancomycinyesyes30 µg (disc)
4352371415nitrofurantoinyesyes300 µg (disc)

metabolite production

  • @ref: 43523
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
43523urease+3.5.1.5
43523beta-galactosidase+3.2.1.23
43523gelatinase+
43523catalase+1.11.1.6
43523cytochrome oxidase+1.9.3.1
43523alpha-chymotrypsin-3.4.21.1
43523trypsin-3.4.21.4
43523alpha-glucosidase-3.2.1.20
43523alpha-galactosidase-3.2.1.22
43523cystine arylamidase-3.4.11.3
43523alkaline phosphatase+3.1.3.1
43523valine arylamidase+
43523beta-glucosidase+3.2.1.21
43523lipase (C 14)+/-

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43523C10:0 3OH17.6
    43523C16:022
    43523C16:1ω7c / C15:0 iso 2OH28.4
  • type of FA analysis: whole cell analysis
  • incubation medium: qsZMA plates
  • agar/liquid: agar
  • incubation temperature: 35
  • incubation time: 2
  • incubation pH: 6
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.2B
  • library/peak naming table: RTSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 43523
  • sample type: sediment sample collected from a ridge wall of the Southwest Indian Ridge
  • geographic location: Indian Ocean
  • country: Indian Ocean
  • latitude: -26.941
  • longitude: 67.324

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_6439.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_3046;97_3743;98_4751;99_6439&stattab=map
  • Last taxonomy: Alteromonas pelagimontana
  • 16S sequence: LT593862
  • Sequence Identity:
  • Total samples: 291
  • soil counts: 35
  • aquatic counts: 229
  • animal counts: 21
  • plant counts: 6

Sequence information

16S sequences

  • @ref: 43523
  • description: Alteromonas sp. 5.12 partial 16S rRNA gene, strain 5.12
  • accession: LT593862
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alteromonas pelagimontana 5.12GCA_002499975completencbi1858656
66792Alteromonas pelagimontana 5.122791355104draftimg1858656

GC content

  • @ref: 43523
  • GC-content: 46.1
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno100yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.589no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes80.118yes
125438spore-formingspore-formingAbility to form endo- or exosporesno89.558no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97.481no
125438motile2+flagellatedAbility to perform flagellated movementyes88.137yes
125439BacteriaNetspore_formationAbility to form endo- or exosporesno93.7
125439BacteriaNetmotilityAbility to perform movementyes58.7
125439BacteriaNetgram_stainReaction to gram-stainingnegative98.2
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe99.5

External links

@ref: 43523

culture collection no.: LMG 29661, MCC 3250

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28905702Alteromonas pelagimontana sp. nov., a marine exopolysaccharide-producing bacterium isolated from the Southwest Indian Ridge.Sinha RK, Krishnan KP, Singh A, Thomas FA, Jain A, John Kurian PInt J Syst Evol Microbiol10.1099/ijsem.0.0022452017Alteromonas/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Indian Ocean, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Genetics32665084Complete genome sequence of Alteromonas pelagimontana 5.12(T), a marine exopolysaccharide-producing bacterium isolated from hydrothermally influenced deep-sea sediment of eastern Southwest Indian Ridge.Sinha RK, Krishnan KP, Kurian PJMar Genomics10.1016/j.margen.2020.1008042020Alteromonas/*genetics, *Genome, Bacterial, Geologic Sediments/*microbiology, Hydrothermal Vents/*microbiology, Indian Ocean, Polysaccharides/metabolism, Whole Genome SequencingMetabolism

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43523Rupesh Kumar Sinha, K. P. Krishnan, Archana Singh, Femi Anna Thomas, Anand Jain, P. John KurianAlteromonas pelagimontana sp. nov., a marine exopolysaccharide-producing bacterium isolated from the Southwest Indian Ridge10.1099/ijsem.0.002245IJSEM 67: 4032-4038 201728905702
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG