Strain identifier
version 8.1 (current version)
General
@ref: 43519
BacDive-ID: 140741
keywords: 16S sequence, Bacteria, Gram-negative, motile, rod-shaped, colony-forming
description: Xanthomonas floridensis ATCC TSD-60 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from leaves of watercress.
NCBI tax id
- NCBI tax id: 1843580
- Matching level: species
doi: 10.13145/bacdive140741.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Xanthomonas
- species: Xanthomonas floridensis
- full scientific name: Xanthomonas floridensis Vicente et al. 2017
@ref: 43519
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Lysobacterales
family: Xanthomonadaceae
genus: Xanthomonas
species: Xanthomonas floridensis
type strain: yes
Morphology
cell morphology
- @ref: 43519
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: polar
colony morphology
- @ref: 43519
- colony size: 2 mm
- colony color: yellow
- colony shape: circular
- incubation period: 2 days
- medium used: Yeast dextrose calcium carbonate agar
Culture and growth conditions
culture medium
- @ref: 43519
- name: Yeast dextrose calcium carbonate agar
- growth: yes
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43519 | 16523 | D-serine | - | respiration |
| 43519 | 16865 | gamma-aminobutyric acid | - | respiration |
| 43519 | 62345 | L-rhamnose | - | respiration |
| 43519 | 16634 | raffinose | - | respiration |
| 43519 | 17925 | alpha-D-glucose | + | respiration |
| 43519 | 15824 | D-fructose | + | respiration |
| 43519 | 16899 | D-mannitol | + | respiration |
| 43519 | 16024 | D-mannose | + | respiration |
| 43519 | 33801 | D-saccharate | + | respiration |
| 43519 | 5291 | gelatin | + | respiration |
| 43519 | 28066 | gentiobiose | + | respiration |
| 43519 | 17306 | maltose | + | respiration |
| 43519 | 17272 | propionate | + | respiration |
Isolation, sampling and environmental information
isolation
- @ref: 43519
- sample type: leaves of watercress
- geographic location: Florida
- country: USA
- origin.country: USA
- continent: North America
- isolation date: 2014
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Aquatic plant |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
taxonmaps
- @ref: 69479
- File name: preview.99_92.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
- Last taxonomy: Xanthomonas
- 16S sequence: KX518636
- Sequence Identity:
- Total samples: 52152
- soil counts: 10026
- aquatic counts: 6826
- animal counts: 28252
- plant counts: 7048
Sequence information
16S sequences
- @ref: 43519
- description: 16S rRNA gene sequence
- accession: KX518636
- database: nuccore
GC content
- @ref: 43519
- GC-content: 65.14
External links
@ref: 43519
culture collection no.: ATCC TSD-60, ICMP 21312, LMG 29665, NCPPB 4601, WHRI 8848
literature
- topic: Phylogeny
- Pubmed-ID: 28840805
- title: Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida.
- authors: Vicente JG, Rothwell S, Holub EB, Studholme DJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002189
- year: 2017
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Florida, Genes, Bacterial, Multilocus Sequence Typing, Nasturtium/*microbiology, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, Plant Diseases/*microbiology, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Xanthomonas/*classification/genetics/isolation & purification
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | journal | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 43519 | Joana G. Vicente, Steve Rothwell, Eric B. Holub, David J. Studholme | Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida | 10.1099/ijsem.0.002189 | IJSEM 67: 3645-3654 2017 | 28840805 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |