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Strain identifier

BacDive ID: 140741

Type strain: Yes

Species: Xanthomonas floridensis

NCBI tax ID(s): 1843580 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43519

BacDive-ID: 140741

keywords: 16S sequence, Bacteria, Gram-negative, motile, rod-shaped, colony-forming

description: Xanthomonas floridensis ATCC TSD-60 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from leaves of watercress.

NCBI tax id

  • NCBI tax id: 1843580
  • Matching level: species

doi: 10.13145/bacdive140741.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas floridensis
  • full scientific name: Xanthomonas floridensis Vicente et al. 2017

@ref: 43519

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Xanthomonadaceae

genus: Xanthomonas

species: Xanthomonas floridensis

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityflagellum arrangementconfidence
43519negativerod-shapedyespolar
69480yes71.266
69480negative99.048

colony morphology

  • @ref: 43519
  • colony size: 2 mm
  • colony color: yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Yeast dextrose calcium carbonate agar

Culture and growth conditions

culture medium

  • @ref: 43519
  • name: Yeast dextrose calcium carbonate agar
  • growth: yes

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.879

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 99.138

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4351916523D-serine-respiration
4351916865gamma-aminobutyric acid-respiration
4351962345L-rhamnose-respiration
4351916634raffinose-respiration
4351917925alpha-D-glucose+respiration
4351915824D-fructose+respiration
4351916899D-mannitol+respiration
4351916024D-mannose+respiration
4351933801D-saccharate+respiration
435195291gelatin+respiration
4351928066gentiobiose+respiration
4351917306maltose+respiration
4351917272propionate+respiration

Isolation, sampling and environmental information

isolation

  • @ref: 43519
  • sample type: leaves of watercress
  • geographic location: Florida
  • country: USA
  • origin.country: USA
  • continent: North America
  • isolation date: 2014

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Aquatic plant
#Host Body-Site#Plant#Leaf (Phyllosphere)

taxonmaps

  • @ref: 69479
  • File name: preview.99_92.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
  • Last taxonomy: Xanthomonas
  • 16S sequence: KX518636
  • Sequence Identity:
  • Total samples: 52152
  • soil counts: 10026
  • aquatic counts: 6826
  • animal counts: 28252
  • plant counts: 7048

Sequence information

16S sequences

  • @ref: 43519
  • description: 16S rRNA gene sequence
  • accession: KX518636
  • database: nuccore

GC content

  • @ref: 43519
  • GC-content: 65.14

External links

@ref: 43519

culture collection no.: ATCC TSD-60, ICMP 21312, LMG 29665, NCPPB 4601, WHRI 8848

literature

  • topic: Phylogeny
  • Pubmed-ID: 28840805
  • title: Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida.
  • authors: Vicente JG, Rothwell S, Holub EB, Studholme DJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002189
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Florida, Genes, Bacterial, Multilocus Sequence Typing, Nasturtium/*microbiology, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, Plant Diseases/*microbiology, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Xanthomonas/*classification/genetics/isolation & purification
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43519Joana G. Vicente, Steve Rothwell, Eric B. Holub, David J. StudholmePathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida10.1099/ijsem.0.002189IJSEM 67: 3645-3654 201728840805
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes