Strain identifier

BacDive ID: 140714

Type strain: Yes

Species: Paenibacillus aurantiacus

Strain Designation: RC11

Strain history: <- Somboon Tanasupawat, Chulalongkorn Univ.

NCBI tax ID(s): 1936118 (species)

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General

@ref: 43489

BacDive-ID: 140714

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, rod-shaped, colony-forming

description: Paenibacillus aurantiacus RC11 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from ant nest soil sample.

NCBI tax id

  • NCBI tax id: 1936118
  • Matching level: species

strain history

@refhistory
67770S. Tanasupawat; Chulalongkorn Univ., Thailand; RC11.
67771<- Somboon Tanasupawat, Chulalongkorn Univ.

doi: 10.13145/bacdive140714.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus aurantiacus
  • full scientific name: Paenibacillus aurantiacus Wasoontharawat et al. 2017

@ref: 43489

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus aurantiacus

strain designation: RC11

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shape
43489positive2.1-3.7 µm0.6-0.9 µmrod-shaped
67771rod-shaped
67771positive

colony morphology

  • @ref: 43489
  • colony color: whitisch-orange
  • colony shape: circular
  • incubation period: 2 days
  • medium used: TSA agar

Culture and growth conditions

culture medium

  • @ref: 43489
  • name: Trypticase Soy Agar (TSA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43489positivegrowth20-40
43489nogrowth45thermophilic
43489positiveoptimum30-37mesophilic
67770positivegrowth28mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
43489positivegrowth6-8
43489nogrowth5.5
43489positiveoptimum7-7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43489aerobe
67771aerobe

spore formation

  • @ref: 43489
  • spore description: subterminal, observed in swollen sporangia
  • type of spore: endospore
  • spore formation: yes

halophily

  • @ref: 43489
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2 %(w/v)

observation

@refobservation
67770quinones: MK-7
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4348917234glucose-fermentation
434895291gelatin-hydrolysis
4348953426tween 80-hydrolysis
4348917108D-arabinose+builds acid from
4348917634D-glucose+builds acid from
4348918287L-fucose+builds acid from
4348917716lactose+builds acid from
434896731melezitose+builds acid from
4348943943methyl alpha-D-mannoside+builds acid from
4348917992sucrose+builds acid from
4348929016arginine+hydrolysis
434894853esculin+hydrolysis
4348928017starch+hydrolysis
4348917632nitrate+reduction
43489581435-dehydro-D-gluconate+/-builds acid from
4348933942ribose+/-builds acid from
4348917151xylitol+/-builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.
4348917698chloramphenicolyesyes30 µg
4348927902tetracyclineyesyes30 µg
4348928669bacitracinyesyes10 µg
4348928971ampicillinyesyes10 µg

metabolite production

@refChebi-IDmetaboliteproduction
4348915688acetoinno
4348935581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-test
4348917234glucose-
4348915688acetoin-

enzymes

@refvalueactivityec
43489cytochrome oxidase+1.9.3.1
43489catalase+1.11.1.6
43489urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
43489ant nest soil sampleBan Dung district, Udon Thani ProvinceThailandTHAAsia
67770Ant nest soil collected from Udon Thani ProvinceThailandTHAAsia
67771From ant nestUdon Thani ProvinceThailandTHAAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_64581.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_8055;97_9692;98_11911;99_64581&stattab=map
  • Last taxonomy: Paenibacillus
  • 16S sequence: LC210810
  • Sequence Identity:
  • Total samples: 111
  • soil counts: 99
  • aquatic counts: 1
  • animal counts: 5
  • plant counts: 6

Sequence information

16S sequences

  • @ref: 43489
  • description: 16S rRNA gene sequence
  • accession: LC210810
  • database: nuccore

GC content

@refGC-contentmethod
4348957.9
6777057.9high performance liquid chromatography (HPLC)

External links

@ref: 43489

culture collection no.: KCTC 33816, LMG 29659, TISTR 2452, JCM 32623

literature

  • topic: Phylogeny
  • Pubmed-ID: 28829031
  • title: Paenibacillus aurantiacus sp. nov., isolated from ant nest soil.
  • authors: Wasoontharawat M, Phongsopitanun W, Siriudom S, Tanasupawat S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002088
  • year: 2017
  • mesh: Animals, *Ants, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43489Metinee Wasoontharawat, Wongsakorn Phongsopitanun, Sakutala Siriudom, Somboon TanasupawatPaenibacillus aurantiacus sp. nov., isolated from ant nest soil10.1099/ijsem.0.002088IJSEM 67: 3226-3230 201728829031
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/