Strain identifier
BacDive ID: 140705
Type strain:
Species: Filimonas aquilariae
Strain Designation: CC-YHH650
Strain history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-YHH650.
NCBI tax ID(s): 1848969 (species)
General
@ref: 43477
BacDive-ID: 140705
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming
description: Filimonas aquilariae CC-YHH650 is an aerobe, Gram-negative, motile bacterium that forms irregular colonies and was isolated from agarwood chips.
NCBI tax id
- NCBI tax id: 1848969
- Matching level: species
strain history
- @ref: 67770
- history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-YHH650.
doi: 10.13145/bacdive140705.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Chitinophagia
- order: Chitinophagales
- family: Chitinophagaceae
- genus: Filimonas
- species: Filimonas aquilariae
- full scientific name: Filimonas aquilariae Lin et al. 2017
@ref: 43477
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Chitinophagales
family: Chitinophagaceae
genus: Filimonas
species: Filimonas aquilariae
strain designation: CC-YHH650
type strain: yes
Morphology
cell morphology
- @ref: 43477
- gram stain: negative
- cell length: 1.2-1.4 µm
- cell width: 0.6-0.8 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
colony morphology
- @ref: 43477
- colony size: 1-2 mm
- colony color: translucent light yellow
- colony shape: irregular
- incubation period: 2 days
- medium used: Nutrient agar
Culture and growth conditions
culture medium
- @ref: 43477
- name: Nutrient agar (NA)
- growth: yes
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43477 | positive | growth | 15-37 | |
43477 | positive | optimum | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
43477 | positive | growth | 6-8 |
43477 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 43477
- oxygen tolerance: aerobe
halophily
@ref | salt | growth | tested relation | concentration | halophily level |
---|---|---|---|---|---|
43477 | NaCl | positive | growth | 0-1 %(w/v) | |
43477 | NaCl | positive | optimum | 0 %(w/v) | non-halophilic |
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43477 | 27689 | decanoate | - | assimilation |
43477 | 17634 | D-glucose | - | assimilation |
43477 | casein | - | hydrolysis | |
43477 | 5291 | gelatin | - | hydrolysis |
43477 | 28017 | starch | - | hydrolysis |
43477 | 53424 | tween 20 | - | hydrolysis |
43477 | 53423 | tween 40 | - | hydrolysis |
43477 | 53425 | tween 60 | - | hydrolysis |
43477 | 53426 | tween 80 | - | hydrolysis |
43477 | 40585 | alpha-cyclodextrin | - | reduction |
43477 | 17754 | glycerol | - | reduction |
43477 | 14336 | glycerol 1-phosphate | - | reduction |
43477 | 15978 | glycerol 3-phosphate | - | reduction |
43477 | 51850 | methyl pyruvate | - | reduction |
43477 | 16899 | D-mannitol | + | assimilation |
43477 | 16024 | D-mannose | + | assimilation |
43477 | 30849 | L-arabinose | + | assimilation |
43477 | 17925 | alpha-D-glucose | + | oxidation |
43477 | 17057 | cellobiose | + | oxidation |
43477 | 12936 | D-galactose | + | oxidation |
43477 | 18024 | D-galacturonic acid | + | oxidation |
43477 | 15748 | D-glucuronate | + | oxidation |
43477 | 16024 | D-mannose | + | oxidation |
43477 | 23652 | dextrin | + | oxidation |
43477 | 28066 | gentiobiose | + | oxidation |
43477 | 24741 | hydroxyproline | + | oxidation |
43477 | 29991 | L-aspartate | + | oxidation |
43477 | 18287 | L-fucose | + | oxidation |
43477 | 15729 | L-ornithine | + | oxidation |
43477 | 17203 | L-proline | + | oxidation |
43477 | 62345 | L-rhamnose | + | oxidation |
43477 | 17716 | lactose | + | oxidation |
43477 | 6359 | lactulose | + | oxidation |
43477 | 17306 | maltose | + | oxidation |
43477 | 28053 | melibiose | + | oxidation |
43477 | 37657 | methyl D-glucoside | + | oxidation |
43477 | 75146 | monomethyl succinate | + | oxidation |
43477 | 73784 | glycyl-l-glutamate | + | oxidation |
43477 | 17992 | sucrose | + | oxidation |
43477 | 27082 | trehalose | + | oxidation |
43477 | 32528 | turanose | + | oxidation |
43477 | 27248 | urocanic acid | + | oxidation |
43477 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
43477 | DNase | - | |
43477 | acid phosphatase | + | 3.1.3.2 |
43477 | alkaline phosphatase | + | 3.1.3.1 |
43477 | esterase (C 4) | + | |
43477 | esterase Lipase (C 8) | + | |
43477 | leucine arylamidase | + | 3.4.11.1 |
43477 | valine arylamidase | + | |
43477 | cystine arylamidase | + | 3.4.11.3 |
43477 | trypsin | + | 3.4.21.4 |
43477 | alpha-chymotrypsin | + | 3.4.21.1 |
43477 | naphthol-AS-BI-phosphohydrolase | + | |
43477 | alpha-galactosidase | + | 3.2.1.22 |
43477 | beta-galactosidase | + | 3.2.1.23 |
43477 | alpha-glucosidase | + | 3.2.1.20 |
43477 | beta-glucosidase | + | 3.2.1.21 |
43477 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
43477 | alpha-fucosidase | + | 3.2.1.51 |
43477 | beta-glucuronidase | - | 3.2.1.31 |
fatty acid profile
fatty acids
@ref fatty acid percentage 43477 C14:0 1.1 43477 C15:1ω5c 3.1 43477 C16:0 3.7 43477 C16:0 3OH 5.3 43477 C16:1ω5c 4.6 43477 C16:1ω7c / C16:1ω6c 13.3 43477 C18:1ω9c 1 43477 C13:0 iso 3.6 43477 C15:0 iso 20.1 43477 C15:0 iso 3OH 2.5 43477 C15:1 iso G 15 43477 C16:0 iso 3OH 1 43477 C17:0 iso 1.2 43477 C17:0 iso 3OH 18.7 - type of FA analysis: whole cell analysis
- incubation medium: NA
- agar/liquid: agar
- incubation temperature: 30
- incubation time: 2
- incubation pH: 7
- incubation_oxygen: aerobic
- software version: Sherlock 6.0
- library/peak naming table: RTSBA6
- system: MIS MIDI
- cutoff value:
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
43477 | agarwood chips | Nantou County | Taiwan | TWN | Asia | 24.097 | 120.856 |
67770 | Agarwood chips | Nantou Country | Taiwan | TWN | Asia |
isolation source categories
- Cat1: #Host Body Product
- Cat2: #Plant
- Cat3: #Timber
taxonmaps
- @ref: 69479
- File name: preview.99_117658.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_185;96_2206;97_59799;98_79438;99_117658&stattab=map
- Last taxonomy: Filimonas aquilariae subclade
- 16S sequence: KU248163
- Sequence Identity:
- Total samples: 90
- soil counts: 24
- aquatic counts: 28
- animal counts: 9
- plant counts: 29
Sequence information
16S sequences
- @ref: 43477
- description: 16S rRNA gene sequence
- accession: KU248163
- database: nuccore
GC content
- @ref: 43477
- GC-content: 46.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 43477
culture collection no.: BCRC 80935, JCM 31197
literature
- topic: Phylogeny
- Pubmed-ID: 28829030
- title: Filimonas aquilariae sp. nov., isolated from agarwood chips.
- authors: Lin SY, Hameed A, Hsu YH, Liu YC, Lai WA, Young CC
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002087
- year: 2017
- mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Taiwan, Thymelaeaceae/*microbiology, Vitamin K 2/analogs & derivatives/chemistry, Wood/*microbiology
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
43477 | Shih-Yao Lin, Asif Hameed, Yi-Han Hsu, You-Cheng Liu, Wei-An Lai, Chiu-Chung Young | Filimonas aquilariae sp. nov., isolated from agarwood chips | 10.1099/ijsem.0.002087 | IJSEM 67: 3219-3225 2017 | 28829030 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |