Strain identifier

BacDive ID: 140701

Type strain: Yes

Species: Marinobacter aquaticus

Strain Designation: M6-53

NCBI tax ID(s): 1935995 (species)

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General

@ref: 43471

BacDive-ID: 140701

keywords: 16S sequence, Bacteria, obligate aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Marinobacter aquaticus M6-53 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from water pond of a saltern.

NCBI tax id

  • NCBI tax id: 1935995
  • Matching level: species

doi: 10.13145/bacdive140701.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter aquaticus
  • full scientific name: Marinobacter aquaticus León et al. 2017

@ref: 43471

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter aquaticus

strain designation: M6-53

type strain: yes

Morphology

cell morphology

  • @ref: 43471
  • gram stain: negative
  • cell length: 1-2.5 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 43471
  • colony size: 0.5-1 mm
  • colony color: white-cream
  • colony shape: circular
  • incubation period: 4-5 days
  • medium used: SMM medium

Culture and growth conditions

culture medium

  • @ref: 43471
  • name: SMM medium
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43471positivegrowth20-40
43471positiveoptimum37mesophilic

culture pH

@refabilitytypepHPH range
43471positivegrowth6.5-9alkaliphile
43471positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43471
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 43471
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentrationhalophily level
43471NaClpositivegrowth5-25 %(w/v)
43471NaClpositiveoptimum10 %(w/v)moderately halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4347130089acetate-carbon source
4347116150benzoate-carbon source
4347128885butanol-carbon source
4347116947citrate-carbon source
4347117108D-arabinose-carbon source
4347127947D-histidine-carbon source
4347116899D-mannitol-carbon source
4347117924D-sorbitol-carbon source
4347165327D-xylose-carbon source
4347125115malate-carbon source
4347116813galactitol-carbon source
4347117113erythritol-carbon source
434714885ethionamide-carbon source
4347115740formate-carbon source
4347129806fumarate-carbon source
4347117754glycerol-carbon source
4347115428glycine-carbon source
43471606565hippurate-carbon source
4347116977L-alanine-carbon source
4347116349L-citrulline-carbon source
4347117561L-cysteine-carbon source
4347117191L-isoleucine-carbon source
4347116643L-methionine-carbon source
4347117115L-serine-carbon source
4347190608L-valine 2-naphthylamide-carbon source
4347117716lactose-carbon source
4347125094lysine-carbon source
4347117306maltose-carbon source
4347128831propanol-carbon source
4347116634raffinose-carbon source
4347133942ribose-carbon source
4347130031succinate-carbon source
4347131011valerate-carbon source
4347117151xylitol-carbon source
4347130089acetate-energy source
4347116150benzoate-energy source
4347128885butanol-energy source
4347117108D-arabinose-energy source
4347127947D-histidine-energy source
4347116899D-mannitol-energy source
4347117924D-sorbitol-energy source
4347165327D-xylose-energy source
4347125115malate-energy source
4347116813galactitol-energy source
4347117113erythritol-energy source
434714885ethionamide-energy source
4347115740formate-energy source
4347129806fumarate-energy source
4347117754glycerol-energy source
4347115428glycine-energy source
43471606565hippurate-energy source
4347116977L-alanine-energy source
4347116349L-citrulline-energy source
4347117561L-cysteine-energy source
4347117191L-isoleucine-energy source
4347116643L-methionine-energy source
4347117115L-serine-energy source
4347190608L-valine 2-naphthylamide-energy source
4347117716lactose-energy source
4347125094lysine-energy source
4347117306maltose-energy source
4347128831propanol-energy source
4347116634raffinose-energy source
4347133942ribose-energy source
4347130031succinate-energy source
4347131011valerate-energy source
4347117151xylitol-energy source
4347117234glucose-fermentation
434714853esculin-hydrolysis
434715291gelatin-hydrolysis
4347128017starch-hydrolysis
4347127947D-histidine-nitrogen source
434714885ethionamide-nitrogen source
4347115428glycine-nitrogen source
4347116977L-alanine-nitrogen source
4347117561L-cysteine-nitrogen source
4347117191L-isoleucine-nitrogen source
4347116643L-methionine-nitrogen source
4347117115L-serine-nitrogen source
4347190608L-valine 2-naphthylamide-nitrogen source
4347125094lysine-nitrogen source
4347117632nitrate-reduction
4347116301nitrite-reduction
4347118050L-glutamine+carbon source
4347115729L-ornithine+carbon source
4347117295L-phenylalanine+carbon source
4347115361pyruvate+carbon source
4347118050L-glutamine+energy source
4347115729L-ornithine+energy source
4347117295L-phenylalanine+energy source
4347116991dna+hydrolysis
4347153426tween 80+hydrolysis
4347118050L-glutamine+nitrogen source
4347115729L-ornithine+nitrogen source
4347117295L-phenylalanine+nitrogen source

metabolite production

@refChebi-IDmetaboliteproduction
4347115688acetoinno
4347116136hydrogen sulfideno
4347135581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-testcitrate test
4347117234glucose-
4347115688acetoin-
4347116947citrate-

enzymes

@refvalueactivityec
43471catalase+1.11.1.6
43471cytochrome oxidase+1.9.3.1
43471phosphatase+
43471urease-3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 43471
  • sample type: water pond of a saltern
  • geographic location: Isla Cristina, Huelva
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Condition#Saline
#Environmental#Aquatic#Pond (small)

taxonmaps

  • @ref: 69479
  • File name: preview.99_24946.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_693;97_808;98_12049;99_24946&stattab=map
  • Last taxonomy: Marinobacter
  • 16S sequence: LT714149
  • Sequence Identity:
  • Total samples: 2358
  • soil counts: 271
  • aquatic counts: 1572
  • animal counts: 444
  • plant counts: 71

Sequence information

16S sequences

  • @ref: 43471
  • description: 16S rRNA gene sequence
  • accession: LT714149
  • database: nuccore

GC content

  • @ref: 43471
  • GC-content: 56.4
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 43471

culture collection no.: CECT 9228, LMG 30006

literature

  • topic: Phylogeny
  • Pubmed-ID: 28792369
  • title: Marinobacter aquaticus sp. nov., a moderately halophilic bacterium from a solar saltern.
  • authors: Leon MJ, Sanchez-Porro C, Ventosa A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001984
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Marinobacter/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, Ponds/*microbiology, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Sodium Chloride, Spain
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43471María Jos e León, Cristina Sanchez-Porro, Antonio VentosaMarinobacter aquaticus sp. nov., a moderately halophilic bacterium from a solar saltern10.1099/ijsem.0.001984IJSEM 67: 2622-2627 201728792369
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/