Archive BacDiveID:10.13145/bacdive140700.20230509.8.1

Strain identifier

BacDive ID: 140700

Type strain:

Species: Natronospira proteinivora

Strain Designation: BSker1

Strain history: D. Y. Sorokin; Delft Univ. of Technol., Netherlands; BSker1.

NCBI tax ID(s): 1807133 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 43470

BacDive-ID: 140700

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, organoheterotroph, thermophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Natronospira proteinivora BSker1 is an obligate aerobe, organoheterotroph, thermophilic bacterium that forms circular colonies and was isolated from Brine from four hypersaline soda lakes in the Kulunda Steppe.

NCBI tax id

NCBI tax id: 1807133
Matching level: species

strain history

@ref: 67770
history: D. Y. Sorokin; Delft Univ. of Technol., Netherlands; BSker1.

doi: 10.13145/bacdive140700.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Chromatiales
family: Ectothiorhodospiraceae
genus: Natronospira
species: Natronospira proteinivora
full scientific name: Natronospira proteinivora Sorokin et al. 2017

@ref: 43470

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Chromatiales

family: Ectothiorhodospiraceae

genus: Natronospira

species: Natronospira proteinivora

strain designation: BSker1

type strain: yes

Morphology

cell morphology

@ref: 43470
gram stain: negative
cell length: 2-30 µm
cell width: 0.35-0.4 µm
cell shape: rod-shaped
motility: yes
flagellum arrangement: polar

colony morphology

@ref: 43470
colony size: 3 mm
colony color: Yellowish
colony shape: circular
medium used: Mineral Base medium

Culture and growth conditions

culture medium

@ref: 43470
name: Mineral Base medium
growth: yes

culture temp

@ref	growth	type	temperature	range
43470	positive	maximum	45	thermophilic
67770	positive	growth	37	mesophilic

culture pH

@ref	ability	type	pH	PH range
43470	positive	growth	8.5-10.25	alkaliphile
43470	positive	optimum	9.5

Physiology and metabolism

oxygen tolerance

@ref: 43470
oxygen tolerance: obligate aerobe

nutrition type

@ref: 43470
type: organoheterotroph

observation

@ref: 67770
observation: quinones: Q-8

enzymes

@ref: 43470
value: protease
activity: +

Isolation, sampling and environmental information

isolation

@ref	sample type	sampling date	geographic location	country	origin.country	continent
43470	Brine from four hypersaline soda lakes in the Kulunda Steppe	2016-07	Altai	Russia	RUS	Asia
67770	Hypersaline soda lake in Kulunda Steppe		Altai	Russia	RUS

isolation source categories

Cat1	Cat2	Cat3
#Condition	#Saline
#Environmental	#Aquatic	#Non-marine Saline and Alkaline
#Environmental	#Aquatic	#Lake (large)

taxonmaps

@ref: 69479
File name: preview.99_87375.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2031;96_8734;97_27867;98_35504;99_87375&stattab=map
Last taxonomy: Natronospira proteinivora subclade
16S sequence: KU720568
Sequence Identity:
Total samples: 32
soil counts: 2
aquatic counts: 18
animal counts: 11
plant counts: 1

Sequence information

16S sequences

@ref: 43470
description: 16S rRNA gene sequence
accession: KU720568
database: nuccore

Genome sequences

@ref: 66792
description: Natronospira proteinivora BSker1
accession: GCA_024170465
assembly level: contig
database: ncbi
NCBI tax ID: 1807133

GC content

@ref: 43470
GC-content: 60.1
method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	yes	65.685	yes
gram-positive	no	99.12	yes
anaerobic	no	97.3	yes
aerobic	yes	84.887	yes
halophile	yes	54.348	no
spore-forming	no	95.733	no
motile	yes	88.059	yes
glucose-ferment	no	86.297	no
thermophile	no	94.636	no
glucose-util	yes	66.863	no

External links

@ref: 43470

culture collection no.: JCM 31341, UNIQUEM U1008, UNIQEM U1008

literature

topic: Phylogeny
Pubmed-ID: 28758627
title: Natronospira proteinivora gen. nov., sp. nov, an extremely salt-tolerant, alkaliphilic gammaproteobacterium from hypersaline soda lakes.
authors: Sorokin DY, Kublanov IV, Khijniak TV
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijsem.0.001983
year: 2017
mesh: *Alkalies, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Ectothiorhodospiraceae/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Lakes/microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, *Salinity, Sequence Analysis, DNA, *Water Microbiology
topic2: Transcriptome

Reference

@id	authors	title	doi/url	journal	pubmed
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
43470	Dimitry Y. Sorokin, Ilya V. Kublanov, Tatiana V. Khijniak	Natronospira proteinivora gen. nov., sp. nov, an extremely salt-tolerant, alkaliphilic gammaproteobacterium from hypersaline soda lakes	10.1099/ijsem.0.001983	IJSEM 67: 2604-2608 2017	28758627
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/