Strain identifier

BacDive ID: 140678

Type strain: Yes

Species: Zunongwangia endophytica

Strain Designation: CPA58

Strain history: Fidalgo, C. University of Aveiro

NCBI tax ID(s): 1808945 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43442

BacDive-ID: 140678

keywords: 16S sequence, Bacteria, microaerophile, Gram-negative, rod-shaped

description: Zunongwangia endophytica CPA58 is a microaerophile, Gram-negative, rod-shaped bacterium that was isolated from surface-sterilized aboveground tissues of the halophyte Halimione portulacoides, collected from a salt marsh in Ria de Aveiro.

NCBI tax id

  • NCBI tax id: 1808945
  • Matching level: species

strain history

  • @ref: 67772
  • history: Fidalgo, C. University of Aveiro

doi: 10.13145/bacdive140678.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Zunongwangia
  • species: Zunongwangia endophytica
  • full scientific name: Zunongwangia endophytica Fidalgo et al. 2017

@ref: 43442

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Zunongwangia

species: Zunongwangia endophytica

strain designation: CPA58

type strain: yes

Morphology

cell morphology

  • @ref: 43442
  • gram stain: negative
  • cell length: 1.38-3.4 µm
  • cell width: 0.55-1.13 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43442
  • colony size: 0.6-2.2 mm
  • colony color: creamy-yellow
  • incubation period: 2 days
  • medium used: Marine agar

pigmentation

  • @ref: 43442
  • production: no
  • name: Flexirubin-type

Culture and growth conditions

culture medium

  • @ref: 43442
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43442positivegrowth4-30
43442positiveoptimum26mesophilic
67772positiveminimum4psychrophilic
67772positiveoptimum26mesophilic
67772positivemaximum30mesophilic

culture pH

@refabilitytypepHPH range
43442positivegrowth6-9alkaliphile
43442positiveoptimum6-8
67772positiveoptimum6.0-8.0
67772positivemaximum9.0
67772positiveminimum6.0

Physiology and metabolism

oxygen tolerance

  • @ref: 43442
  • oxygen tolerance: microaerophile

halophily

@refsaltgrowthtested relationconcentration
43442NaClpositivegrowth2-10 %(w/v)
43442NaClpositiveoptimum2-3 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4344217128adipate-assimilation
4344227689decanoate-assimilation
4344216947citrate-assimilation
4344217634D-glucose-assimilation
4344216899D-mannitol-assimilation
4344216024D-mannose-assimilation
4344230849L-arabinose-assimilation
4344225115malate-assimilation
4344217306maltose-assimilation
43442506227N-acetylglucosamine-assimilation
4344218401phenylacetate-assimilation
4344232032potassium gluconate-assimilation
4344253258sodium citrate-assimilation
4344227613amygdalin-builds acid from
4344218305arbutin-builds acid from
4344215963ribitol-builds acid from
4344217108D-arabinose-builds acid from
4344218333D-arabitol-builds acid from
4344217057cellobiose-builds acid from
4344215824D-fructose-builds acid from
4344228847D-fucose-builds acid from
4344212936D-galactose-builds acid from
4344217634D-glucose-builds acid from
4344262318D-lyxose-builds acid from
4344216899D-mannitol-builds acid from
4344216024D-mannose-builds acid from
4344216988D-ribose-builds acid from
4344217924D-sorbitol-builds acid from
4344216443D-tagatose-builds acid from
4344265327D-xylose-builds acid from
4344216813galactitol-builds acid from
4344217113erythritol-builds acid from
4344228066gentiobiose-builds acid from
4344217754glycerol-builds acid from
4344228087glycogen-builds acid from
4344217268myo-inositol-builds acid from
4344215443inulin-builds acid from
4344230849L-arabinose-builds acid from
4344218403L-arabitol-builds acid from
4344218287L-fucose-builds acid from
4344262345L-rhamnose-builds acid from
4344217266L-sorbose-builds acid from
4344265328L-xylose-builds acid from
4344217716lactose-builds acid from
4344217306maltose-builds acid from
434426731melezitose-builds acid from
4344228053melibiose-builds acid from
4344243943methyl alpha-D-mannoside-builds acid from
4344274863methyl beta-D-xylopyranoside-builds acid from
4344237657methyl D-glucoside-builds acid from
43442506227N-acetylglucosamine-builds acid from
43442potassium 2-dehydro-D-gluconate-builds acid from
43442potassium 5-dehydro-D-gluconate-builds acid from
4344232032potassium gluconate-builds acid from
4344216634raffinose-builds acid from
4344217814salicin-builds acid from
4344228017starch-builds acid from
4344217992sucrose-builds acid from
4344227082trehalose-builds acid from
4344232528turanose-builds acid from
4344217151xylitol-builds acid from
4344217634D-glucose-fermentation
4344285146carboxymethylcellulose-hydrolysis
43442casein-hydrolysis
4344216991dna-hydrolysis
4344228017starch-hydrolysis
4344217632nitrate-reduction
43442esculin ferric citrate+builds acid from
434424853esculin+hydrolysis
434425291gelatin+hydrolysis
43442O-nitrophenyl-beta-D-galactopyranosid+hydrolysis
4344253424tween 20+hydrolysis
4344237166xylan+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
4344216136hydrogen sulfideno
4344235581indoleno

enzymes

@refvalueactivityec
43442alkaline phosphatase+3.1.3.1
43442esterase (C 4)+
43442esterase Lipase (C 8)+
43442leucine arylamidase+3.4.11.1
43442valine arylamidase+
43442trypsin+3.4.21.4
43442acid phosphatase+3.1.3.2
43442naphthol-AS-BI-phosphohydrolase+
43442alpha-glucosidase+3.2.1.20
43442N-acetyl-beta-glucosaminidase+3.2.1.52
43442cystine arylamidase+/-3.4.11.3
43442alpha-chymotrypsin+/-3.4.21.1
43442alpha-galactosidase+/-3.2.1.22
43442beta-galactosidase+/-3.2.1.23
43442lipase (C 14)-
43442beta-glucuronidase-3.2.1.31
43442alpha-mannosidase-3.2.1.24
43442alpha-fucosidase-3.2.1.51
43442catalase+1.11.1.6
43442cytochrome oxidase-1.9.3.1
43442beta-glucosidase+3.2.1.21
43442protease+
43442beta-galactosidase+3.2.1.23
43442arginine dihydrolase-3.5.3.6
43442urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    43442C15:0 anteiso8.4
    43442C17:1 anteiso ω9c1.4
    43442C15:06.6
    43442C15:0 2OH2
    43442C15:1ω6c1.4
    43442C16:17c / iso-C15:02-OH13.5
    43442C17:0 2OH1.6
    43442C17:1ω6c1.9
    43442C15:0 iso20.8
    43442C15:0 iso 3OH2.8
    43442C15:1 iso G7.4
    43442C16:0 iso1.3
    43442C16:0 iso 3OH1.4
    43442C17:0 iso 3OH11.7
    43442iso-C17:9c / 10-methyl-C16:03.8
    43442Unknown ECL 13.5637.613563
    43442Unknown ECL 13.6521
    43442Unknown ECL 15.9381.2
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine agar
  • agar/liquid: agar
  • incubation temperature: 26
  • incubation time: 2
  • incubation_oxygen: microaerophil
  • software version: Sherlock 6.0
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling datelatitudelongitude
43442surface-sterilized aboveground tissues of the halophyte Halimione portulacoides, collected from a salt marsh in Ria de AveiroRia de AveiroPortugalPRTEurope
67772Surface-sterilized aboveground tissues of the halophyte Halimione portulacoides, collected from a salt marshAveiro, AveiroPortugalPRTEurope201240.6582-8.68905

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Salt marsh
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Sterilized plant part

taxonmaps

  • @ref: 69479
  • File name: preview.99_73979.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_1827;97_39782;98_51769;99_73979&stattab=map
  • Last taxonomy: Zunongwangia endophytica subclade
  • 16S sequence: KY310594
  • Sequence Identity:
  • Total samples: 69
  • soil counts: 4
  • aquatic counts: 56
  • animal counts: 2
  • plant counts: 7

Safety information

risk assessment

  • @ref: 67772
  • biosafety level: 1

Sequence information

16S sequences

  • @ref: 43442
  • description: 16S rRNA gene sequence
  • accession: KY310594
  • database: nuccore

GC content

  • @ref: 43442
  • GC-content: 35.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43442

culture collection no.: CECT 9128, LMG 29517, UCCCB46

literature

  • topic: Phylogeny
  • Pubmed-ID: 28853694
  • title: Zunongwangia endophytica sp. nov., an endophyte isolated from the salt marsh plant, Halimione portulacoides, and emended description of the genus Zunongwangia.
  • authors: Fidalgo C, Martins R, Proenca DN, Morais PV, Alves A, Henriques I
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002069
  • year: 2017
  • mesh: Amaranthaceae/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Endophytes/classification/genetics/isolation & purification, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Wetlands
  • topic2: Enzymology

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43442Catia Fidalgo, Ricardo Martins, Diogo Neves Proença, Paula V. Morais, Artur Alves, Isabel HenriquesZunongwangia endophytica sp. nov., an endophyte isolated from the salt marsh plant, Halimione portulacoides, and emended description of the genus Zunongwangia10.1099/ijsem.0.002069IJSEM 67: 3004-3009 201728853694
67772Curators of the UCCCBhttps://ucccb.uc.pt/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/