Strain identifier
BacDive ID: 140672
Type strain: 
Species: Nonomuraea stahlianthi
Strain Designation: SC1-1
NCBI tax ID(s): 1623396 (species)
version 8.1 (current version)
General
@ref: 43436
BacDive-ID: 140672
DSM-Number: 114115
keywords: 16S sequence, Bacteria, mesophilic, Gram-positive
description: Nonomuraea stahlianthi SC1-1 is a mesophilic, Gram-positive bacterium that was isolated from sterilized stem tissue from Stahlianthus campanulatus.
NCBI tax id
- NCBI tax id: 1623396
- Matching level: species
doi: 10.13145/bacdive140672.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Nonomuraea
- species: Nonomuraea stahlianthi
- full scientific name: Nonomuraea stahlianthi Niemhom et al. 2017
@ref: 43436
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptosporangiales
family: Streptosporangiaceae
genus: Nonomuraea
species: Nonomuraea stahlianthi
full scientific name: Nonomuraea stahlianthi Niemhom et al. 2017
strain designation: SC1-1
type strain: yes
Morphology
cell morphology
- @ref: 43436
- gram stain: positive
multimedia
- @ref: 69005
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_114115.jpg
- caption: Medium 65, 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 69005 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf |
| 43436 | ISP2 | yes | |
| 43436 | ISP3 | yes | |
| 43436 | ISP6 | yes |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 43436 | positive | optimum | 30-37 | mesophilic |
| 43436 | no | growth | 45 | thermophilic |
| 69005 | positive | growth | 28 | mesophilic |
culture pH
- @ref: 43436
- ability: positive
- type: growth
- pH: 5-10
- PH range: alkaliphile
Physiology and metabolism
halophily
- @ref: 43436
- salt: NaCl
- growth: positive
- tested relation: maximum
- concentration: 3 %(w/v)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43436 | 5291 | gelatin | - | hydrolysis |
| 43436 | 17057 | cellobiose | + | carbon source |
| 43436 | 15824 | D-fructose | + | carbon source |
| 43436 | 12936 | D-galactose | + | carbon source |
| 43436 | 17634 | D-glucose | + | carbon source |
| 43436 | 16899 | D-mannitol | + | carbon source |
| 43436 | 16024 | D-mannose | + | carbon source |
| 43436 | 16988 | D-ribose | + | carbon source |
| 43436 | 65327 | D-xylose | + | carbon source |
| 43436 | 17754 | glycerol | + | carbon source |
| 43436 | 62345 | L-rhamnose | + | carbon source |
| 43436 | 28053 | melibiose | + | carbon source |
| 43436 | 17268 | myo-inositol | + | carbon source |
| 43436 | 28017 | starch | + | hydrolysis |
| 43436 | 17632 | nitrate | + | reduction |
| 43436 | 30849 | L-arabinose | +/- | carbon source |
| 43436 | 17716 | lactose | +/- | carbon source |
| 43436 | 16634 | raffinose | +/- | carbon source |
| 43436 | 17814 | salicin | +/- | carbon source |
| 43436 | 17992 | sucrose | +/- | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 43436 | sterilized stem tissue from Stahlianthus campanulatus | Udon Thani Province, Thailand | Thailand | THA | Asia |
| 69005 | Stem, Stahlianthus companulatus | Udon Thani | Thailand | THA | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | |
| #Host Body-Site | #Plant | #Sterilized plant part |
| #Host Body-Site | #Plant | #Stem (Branch) |
Safety information
risk assessment
- @ref: 69005
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 43436
- description: 16S rRNA gene sequence
- accession: LC032126
- database: nuccore
GC content
- @ref: 43436
- GC-content: 70.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 43436
culture collection no.: BCC 66361, NBRC 110006, DSM 114115, TBRC 3208
straininfo link
- @ref: 96774
- straininfo: 402768
literature
- topic: Phylogeny
- Pubmed-ID: 28853687
- title: Nonomuraea stahlianthi sp. nov., an endophytic actinomycete isolated from the stem of Stahlianthus campanulatus.
- authors: Niemhom N, Chutrakul C, Suriyachadkun C, Thawai C
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002045
- year: 2017
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Stems/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry, Zingiberaceae/*microbiology
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 43436 | Nantawan Niemhom, Chanikul Chutrakul, Chanwit Suriyachadkun, Chitti Thawa | Nonomuraea stahlianthi sp. nov., an endophytic actinomycete isolated from the stem of Stahlianthus campanulatus | 10.1099/ijsem.0.002045 | IJSEM 67: 2879-2884 2017 | 28853687 | |
| 69005 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-114115 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 114115) | |||
| 96774 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402768.1 |