Strain identifier

BacDive ID: 140668

Type strain: Yes

Species: Mycobacterium stephanolepidis

Strain Designation: NJB0901

Strain history: <- Hanako Fukano, Nippon Veterinary and Life Science Univ.

NCBI tax ID(s): 1520670 (species)

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General

@ref: 64865

BacDive-ID: 140668

DSM-Number: 109040

keywords: genome sequence, 16S sequence, Bacteria, aerobe, rod-shaped

description: Mycobacterium stephanolepidis NJB0901 is an aerobe, rod-shaped bacterium that was isolated from threadsail filefish .

NCBI tax id

  • NCBI tax id: 1520670
  • Matching level: species

strain history

@refhistory
64865<- KCTC; KCTC39843 <- O. Kurata; NJB0901
67770O. Kurata; Sch. of Vet. Med., Nippon Vet. & Life Sci. Univ., Japan; NJB0901.
67771<- Hanako Fukano, Nippon Veterinary and Life Science Univ.

doi: 10.13145/bacdive140668.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium stephanolepidis
  • full scientific name: Mycobacterium stephanolepidis Fukano et al. 2017

@ref: 64865

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium stephanolepidis

full scientific name: Mycobacterium stephanolepidis Fukano et al. 2017

strain designation: NJB0901

type strain: yes

Morphology

cell morphology

  • @ref: 43431
  • cell shape: rod-shaped

colony morphology

  • @ref: 43431
  • colony color: mom-pigmented, rough
  • medium used: Middlebrook 7H11 agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43431Middlebrook 7H11 agaryes
64865MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

culture temp

@refgrowthtypetemperature
43431positivegrowth30
64865positivegrowth30
67770positivegrowth25
67771positivegrowth25-30

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

halophily

  • @ref: 43431
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4343153426tween 80-hydrolysis
4343117632nitrate-reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
434313732clarithromycinyesyes0.25 µg/mL
4343150845doxycyclineyesyes1 µg/mL
43431100241ciprofloxacinyesyes0.5-1 µg/mL

enzymes

  • @ref: 43431
  • value: urease
  • activity: +
  • ec: 3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinenthost speciesgeographic location
43431threadsail filefish (Stephanolepis cirrhifer)
64865Thread-sail filefish Stephanolepis cirrhiferJapanJPNAsia
67770Thread-sail filefish (Stephanolepis cirrhifer)JapanJPNAsiaStephanolepis cirrhiferEhime Pref.
67771From thread-sail filefish(Stephanolepis cirrhifer)JapanJPNAsiaEhime

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Fishes

taxonmaps

  • @ref: 69479
  • File name: preview.99_54.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_44;97_46;98_50;99_54&stattab=map
  • Last taxonomy: Mycobacteroides
  • 16S sequence: AB971866
  • Sequence Identity:
  • Total samples: 21994
  • soil counts: 7046
  • aquatic counts: 6199
  • animal counts: 7007
  • plant counts: 1742

Sequence information

16S sequences

  • @ref: 64865
  • description: Mycobacterium stephanolepidis gene for 16S ribosomal RNA, partial sequence
  • accession: AB971866
  • length: 1467
  • database: nuccore
  • NCBI tax ID: 1520670

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium stephanolepidis NJB09012775507227completeimg1520670
67770[Mycobacterium] stephanolepidis NJB0901GCA_002356335completencbi1520670

External links

@ref: 64865

culture collection no.: JCM 31611, KCTC 39843, DSM 109040

straininfo link

  • @ref: 96772
  • straininfo: 406495

literature

  • topic: Phylogeny
  • Pubmed-ID: 28857733
  • title: Mycobacterium stephanolepidis sp. nov., a rapidly growing species related to Mycobacterium chelonae, isolated from marine teleost fish, Stephanolepis cirrhifer.
  • authors: Fukano H, Wada S, Kurata O, Katayama K, Fujiwara N, Hoshino Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002028
  • year: 2017
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fishes/*microbiology, Genes, Bacterial, Japan, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/microbiology, Mycobacterium chelonae, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43431Hanako Fukano, Shinpei Wada, Osamu Kurata, Kinya Katayama, Nagatoshi Fujiwara, Yoshihiko HoshinoMycobacterium stephanolepidis sp. nov., a rapidly growing species related to Mycobacterium chelonae, isolated from marine teleost fish, Stephanolepis cirrhifer10.1099/ijsem.0.002028IJSEM 67: 2811-2817 201728857733
64865Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-109040Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 109040)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96772Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406495.1