Strain identifier

BacDive ID: 140655

Type strain: Yes

Species: Butyrivibrio proteoclasticus

Strain Designation: B316

NCBI tax ID(s): 43305 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43412

BacDive-ID: 140655

keywords: genome sequence, Bacteria

description: Butyrivibrio proteoclasticus B316 is a bacterium of the family Lachnospiraceae.

NCBI tax id

  • NCBI tax id: 43305
  • Matching level: species

doi: 10.13145/bacdive140655.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Butyrivibrio
  • species: Butyrivibrio proteoclasticus
  • full scientific name: Butyrivibrio proteoclasticus (Attwood et al. 1996) Moon et al. 2008
  • synonyms

    • @ref: 20215
    • synonym: Clostridium proteoclasticum

@ref: 43412

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Lachnospiraceae

genus: Butyrivibrio

species: Butyrivibrio proteoclasticus

strain designation: B316

type strain: yes

Physiology and metabolism

observation

  • @ref: 43412
  • observation: Utilization of the Methylglyoxal shunt pathway as part of the carbohydrate metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4341262968cellulose-degradation
4341217108D-arabinose+assimilation
4341212936D-galactose+assimilation
4341218024D-galacturonic acid+assimilation
4341217634D-glucose+assimilation
4341215748D-glucuronate+assimilation
4341216024D-mannose+assimilation
4341265327D-xylose+assimilation
4341215443inulin+degradation
4341230849L-arabinose+assimilation
4341262345L-rhamnose+assimilation
4341217309pectin+degradation
4341228017starch+degradation
4341237166xylan+degradation

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Butyrivibrio proteoclasticus B316GCA_000145035completencbi515622
66792Butyrivibrio proteoclasticus B316515622.3completepatric515622
66792Butyrivibrio proteoclasticus B316515622.20plasmidpatric515622
66792Butyrivibrio proteoclasticus B316515622.19plasmidpatric515622
66792Butyrivibrio proteoclasticus B316648028012completeimg515622

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes81.786no
flagellatedno57.613no
gram-positiveyes55.856no
anaerobicyes99.231no
aerobicno98.905no
halophileno90.413no
spore-formingyes57.203no
thermophileno84.36no
glucose-utilyes88.757yes
glucose-fermentyes75.372no

External links

@ref: 43412

culture collection no.: ATCC 51982

straininfo link

  • @ref: 96768
  • straininfo: 43274

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny8782685Clostridium proteoclasticum sp. nov., a novel proteolytic bacterium from the bovine rumen.Attwood GT, Reilly K, Patel BKInt J Syst Bacteriol10.1099/00207713-46-3-7531996Animals, Base Sequence, Cattle, Clostridium/*classification/isolation & purification/physiology/ultrastructure, DNA, Bacterial, Endopeptidases/metabolism, Molecular Sequence Data, Phylogeny, Protease Inhibitors/pharmacology, Rumen/*microbiology, Substrate SpecificityGenetics
Metabolism18768601Reclassification of Clostridium proteoclasticum as Butyrivibrio proteoclasticus comb. nov., a butyrate-producing ruminal bacterium.Moon CD, Pacheco DM, Kelly WJ, Leahy SC, Li D, Kopecny J, Attwood GTInt J Syst Evol Microbiol10.1099/ijs.0.65845-02008Bacterial Typing Techniques, Base Composition, Butyrates/*metabolism, Butyrivibrio/*classification/genetics/*metabolism, Carbon/metabolism, Clostridium/*classification/genetics/*metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids, Volatile/metabolism, Genes, rRNA, Linoleic Acid/metabolism, Molecular Sequence Data, Peptide Hydrolases/metabolism, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Stearic Acids/metabolismPhylogeny

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43412William J. Kelly, Sinead C. Leahy, Eric Altermann, Carl J. Yeoman, Jonathan C. Dunne, Zhanhao Kong, Diana M. Pacheco, Dong Li, Samantha J. Noel, Christina D. Moon, Adrian L. Cookson, Graeme T. AttwoodThe Glycobiome of the Rumen Bacterium Butyrivibrio proteoclasticus B316 Highlights Adaptation to a Polysaccharide-Rich Environment10.1371/journal.pone.0011942PLoS ONE 5(8): - 201020689770
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
96768Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID43274.1