Strain identifier

BacDive ID: 140600

Type strain: Yes

Species: Salinovum rubellum

Strain Designation: YCWB25

NCBI tax ID(s): 664787 (species)

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General

@ref: 43279

BacDive-ID: 140600

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Salinovum rubellum YCWB25 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from saltern farm sediment.

NCBI tax id

  • NCBI tax id: 664787
  • Matching level: species

doi: 10.13145/bacdive140600.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Salinovum
  • species: Salinovum rubellum
  • full scientific name: Salinovum rubellum Qu et al. 2017

@ref: 43279

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Salinovum

species: Salinovum rubellum

strain designation: YCWB25

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
43279negative0.9-1.8 µm0.6-1.0 µmrod-shapedno
43279ovoid-shaped

colony morphology

  • @ref: 43279
  • colony size: 0.5-1.0 mm
  • colony color: pink
  • colony shape: circular

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
43279positiveoptimum30mesophilic
43279positivegrowth4-42

culture pH

@refabilitytypepHPH range
43279positivegrowth5.0-9.0alkaliphile
43279positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 43279
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43279
  • type of spore: endospore
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43279NaClpositivegrowth1-10 %(w/v)
43279NaClpositiveoptimum3-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4327953426tween 80-hydrolysis
4327928017starch-hydrolysis
4327917128adipate+assimilation
4327925115malate+assimilation
4327922599arabinose+/-assimilation
4327929864mannitol+/-assimilation
4327918401phenylacetate+/-assimilation
432794853esculin-hydrolysis
4327917632nitrate-reduction
432795291gelatin-hydrolysis
4327917634D-glucose-assimilation
4327930849L-arabinose-assimilation
4327916024D-mannose-assimilation
4327917306maltose-assimilation
4327932032potassium gluconate-assimilation
4327930849L-arabinose+builds acid from
4327928847D-fucose+builds acid from
4327917113erythritol-respiration
4327930089acetate-respiration
4327973706bromosuccinate-respiration
4327927248urocanic acid-respiration
4327916383cis-aconitate-respiration
4327917240itaconate-respiration
43279143136succinamate-respiration
43279182404-hydroxy-L-proline+respiration
4327916947citrate-respiration
43279167632-oxobutanoate-respiration
4327915603L-leucine-respiration
4327928087glycogen-respiration
4327915740formate-respiration
43279309162-oxoglutarate+respiration
4327953423tween 40-respiration
4327953426tween 80-respiration
4327924996lactate-respiration
4327918183L-pyroglutamic acid-respiration
4327917272propionate-respiration
4327973784glycyl-l-glutamate-respiration
43279645522-hydroxybutyrate-respiration
4327951850methyl pyruvate-respiration
43279370543-hydroxybutyrate+respiration
4327941865sebacic acid-respiration
4327930031succinate+respiration
4327975146monomethyl succinate-respiration
43279167244-hydroxybutyrate-respiration
43279286442-oxopentanoate-respiration
4327917196L-asparagine-respiration
4327928053melibiose-respiration
43279181014-hydroxyphenylacetic acid-respiration
4327915971L-histidine-respiration
4327940585alpha-cyclodextrin-respiration
4327915824D-fructose-respiration
43279320055methyl beta-D-glucopyranoside+respiration
4327917596inosine-respiration
4327923652dextrin-respiration
4327918287L-fucose+respiration
4327927605D-psicose+respiration
4327932323glucuronamide-respiration
4327916704uridine-respiration
4327912936D-galactose+respiration
4327916634raffinose-respiration
4327921217L-alaninamide+respiration
4327915729L-ornithine+respiration
4327917748thymidine+respiration
4327928066gentiobiose-respiration
4327962345L-rhamnose+respiration
4327915895D-galactonic acid lactone-respiration
4327915570D-alanine-respiration
4327917295L-phenylalanine-respiration
4327950048phenylethylamine-respiration
4327917925alpha-D-glucose-respiration
4327917924D-sorbitol-respiration
4327918024D-galacturonic acid-respiration
4327916977L-alanine-respiration
4327917203L-proline+respiration
4327917148putrescine-respiration
4327928037N-acetylgalactosamine+respiration
4327917268myo-inositol-respiration
4327917992sucrose-respiration
432798391D-gluconate-respiration
4327915792malonate-respiration
4327973786L-alanylglycine+respiration
4327916000ethanolamine-respiration
43279506227N-acetylglucosamine-respiration
4327936219alpha-lactose-respiration
4327927082trehalose-respiration
4327917784D-glucosaminic acid-respiration
4327916523D-serine-respiration
43279620642,3-butanediol-respiration
4327915963ribitol+respiration
432796359lactulose-respiration
4327932528turanose-respiration
4327915748D-glucuronate-respiration
4327926490quinate-respiration
4327973804glycyl L-aspartic acid-respiration
4327917115L-serine-respiration
4327917754glycerol-respiration
4327930849L-arabinose-respiration
4327917306maltose-respiration
4327917151xylitol+respiration
4327930612D-glucarate-respiration
4327916857L-threonine-respiration
4327914336glycerol 1-phosphate-respiration
4327918333D-arabitol+respiration
4327916899D-mannitol+respiration
4327929991L-aspartate-respiration
4327917126DL-carnitine-respiration
4327929042glucose 1-phosphate-respiration
4327917057cellobiose+respiration
4327916024D-mannose-respiration
4327914314D-glucose 6-phosphate-respiration
4327916865gamma-aminobutyric acid+respiration
4327929985L-glutamate-respiration
4327916899D-mannitol+assimilation
4327917716lactose+carbon source
4327963675sodium succinate+carbon source
4327962345L-rhamnose+carbon source
4327915824D-fructose+carbon source
4327912936D-galactose+carbon source
4327917634D-glucose+carbon source
4327917306maltose+carbon source
4327965327D-xylose+carbon source
4327937684mannose+carbon source
4327915740formate+carbon source
4327917924D-sorbitol+carbon source
4327916236ethanol+carbon source
4327915963ribitol+carbon source
4327927082trehalose+carbon source
4327917268myo-inositol+carbon source
4327916899D-mannitol+carbon source
4327917814salicin+carbon source
4327933942ribose+carbon source
4327916634raffinose+carbon source
4327930849L-arabinose+carbon source
4327917754glycerol+carbon source
4327917057cellobiose+carbon source
432794853esculin+carbon source
4327916947citrate+carbon source
4327929806fumarate+carbon source
4327924265gluconate+carbon source
4327915792malonate+carbon source
4327917272propionate+carbon source
4327917992sucrose+carbon source
4327928017starch+carbon source
4327916977L-alanine+carbon source
4327917115L-serine+carbon source
4327917561L-cysteine+carbon source
4327915971L-histidine+carbon source
4327917191L-isoleucine+carbon source
4327916414L-valine+carbon source
4327918019L-lysine+carbon source
4327916643L-methionine+carbon source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4327929007ceftriaxoneyesyes30 µg
432793534cephalexinyesyes30 µg
432793547cephradineyesyes30 µg
4327917698chloramphenicolyesyes30 µg
43279100241ciprofloxacinyesyes5 µg
432793745clindamycinyesyes2 µg
43279colistin sulfateyesyes10 µg
4327950845doxycyclineyesyes30 µg
4327917833gentamicinyesyes10 µg
432797507neomycinyesyes30 µg
43279100246norfloxacinyesyes5 µg
4327917334penicillinyesyes10 Unit
432798309polymyxin byesyes300 Unit
4327917076streptomycinyesyes10 µg
4327928001vancomycinyesyes30 µg

metabolite production

  • @ref: 43279
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43279catalase+1.11.1.6
43279cytochrome oxidase+1.9.3.1
43279alkaline phosphatase+3.1.3.1
43279esterase (C 4)+
43279esterase Lipase (C 8)+
43279leucine arylamidase+3.4.11.1
43279acid phosphatase+3.1.3.2
43279valine aminopeptidase+
43279lipase (C 14)-
43279cystine aminopeptidase-
43279alpha-chymotrypsin-3.4.21.1
43279naphthol-AS-BI-phosphohydrolase-
43279alpha-galactosidase-3.2.1.22
43279beta-galactosidase-3.2.1.23
43279alpha-glucosidase-3.2.1.20
43279beta-glucuronidase-3.2.1.31
43279N-acetyl-beta-glucosaminidase-3.2.1.52
43279alpha-mannosidase-3.2.1.24
43279beta-D-fucosidase-3.2.1.38
43279arginine dihydrolase-3.5.3.6
43279urease-3.5.1.5
43279trypsin-3.4.21.4

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43279C10:0 3OH2.2
    43279C14:03.3
    43279C16:013.1
    43279C18:1ω7c62.8
    43279C18:01.3
    4327911-methyl C18:1ω7c2.5
    43279cyclo-C19:0ω8c7.6
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine agar 2216 medium
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 2
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 43279
  • sample type: saltern farm sediment
  • geographic location: Jimo-Daqiao of Qingdao in ShanDong Province of China
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 36
  • longitude: 120

isolation source categories

Cat1Cat2Cat3
#Condition#Saline
#Engineered#Agriculture
#Environmental#Terrestrial#Sediment

Sequence information

16S sequences

  • @ref: 43279
  • description: 16S rRNA gene sequences
  • accession: GQ359327.1
  • length: 1334
  • database: ena
  • NCBI tax ID: 664787

GC content

  • @ref: 43279
  • GC-content: 65.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43279

culture collection no.: MCCC 1K00272, LMG 25394

literature

  • topic: Phylogeny
  • Pubmed-ID: 28005516
  • title: Salinovum rubellum gen. nov., sp. nov., isolated from sediment of a saltern.
  • authors: Qu L, Tian X, Wang C, Sun C, Chen J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001751
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, *Salinity, Sequence Analysis, DNA, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43279Lingyun Qu, Xinxin Tian, Chen Wang, Chengjun Sun and Junhui ChenSalinovum rubellum gen. nov., sp. nov., isolated from sediment of a saltern10.1099/ijsem.0.001751IJSEM 67: 1623-1628 201728005516