Strain identifier

BacDive ID: 140565

Type strain: Yes

Species: Halorubrum trueperi

Strain Designation: Y73

Strain history: S. Chen; Dept. of Biol., Sch. of Life Sci. & Technol., Honghe Univ., China; Y73.

NCBI tax ID(s): 2004704 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43186

BacDive-ID: 140565

keywords: 16S sequence, Archaea, aerobe, thermophilic, Gram-negative, pleomorphic-shaped, colony-forming

description: Halorubrum trueperi Y73 is an aerobe, thermophilic, Gram-negative archaeon that forms circular colonies and was isolated from salt mine.

NCBI tax id

  • NCBI tax id: 2004704
  • Matching level: species

strain history

  • @ref: 67770
  • history: S. Chen; Dept. of Biol., Sch. of Life Sci. & Technol., Honghe Univ., China; Y73.

doi: 10.13145/bacdive140565.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Haloferacales
  • family: Halorubraceae
  • genus: Halorubrum
  • species: Halorubrum trueperi
  • full scientific name: Halorubrum trueperi Chen et al. 2017

@ref: 43186

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Haloferacales

family: Halorubraceae

genus: Halorubrum

species: Halorubrum trueperi

strain designation: Y73

type strain: yes

Morphology

cell morphology

  • @ref: 43186
  • gram stain: negative
  • cell length: 2.9-4.1 µm
  • cell width: 0.5-0.7 µm
  • cell shape: pleomorphic-shaped
  • motility: no

colony morphology

  • @ref: 43186
  • colony size: 2-3 mm
  • colony color: orange
  • colony shape: circular
  • incubation period: 10 days
  • medium used: AS-168 medium

Culture and growth conditions

culture medium

  • @ref: 43186
  • name: AS-168 medium
  • growth: yes
  • composition: (g/L): yeast extract (Difco) 5, Casamino acids (Difco) 5, NaCl 200, MgSO4 * 7 H2O 20, sodium citrate 3, KCl 2, monosodium glutamate 1.8, FeSO4 * 7 H2O 0.036, MnCl2 * 4 H2O 0.0036

culture temp

@refgrowthtypetemperaturerange
43186positiveoptimum42-45thermophilic
43186positivegrowth25-50
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
43186positivegrowth6.0-9.0alkaliphile
43186positiveoptimum7.5-8.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43186
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
43186NaClpositivegrowth15-30 %(w/v)
43186NaClpositiveoptimum20 %(w/v)
43186MgCl2positivegrowth0.005-0.3 M
43186MgCl2positiveoptimum0.05 M

observation

  • @ref: 43186
  • observation: lyse in distilled water

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4318617632nitrate-reduction
4318616301nitrite-reduction
4318628017starch-hydrolysis
431865291gelatin-hydrolysis
43186casein-hydrolysis
4318653426tween 80-hydrolysis
4318653424tween 20+hydrolysis
4318653423tween 40+hydrolysis
4318653425tween 60+hydrolysis
4318617634D-glucose+carbon source
4318616024D-mannose+carbon source
4318612936D-galactose+carbon source
4318615824D-fructose+carbon source
4318665327D-xylose+carbon source
4318617306maltose+carbon source
4318617992sucrose+carbon source
4318628017starch+carbon source
4318617754glycerol+carbon source
4318615361pyruvate+carbon source
4318624996lactate+carbon source
4318630031succinate+carbon source
4318625115malate+carbon source
4318629806fumarate+carbon source
4318629985L-glutamate+carbon source
4318630089acetate-carbon source
4318617317D-sorbose-carbon source
4318616988D-ribose-carbon source
4318617716lactose-carbon source
4318616899D-mannitol-carbon source
4318617924D-sorbitol-carbon source
4318616947citrate-carbon source
4318615428glycine-carbon source
4318616977L-alanine-carbon source
4318616467L-arginine-carbon source
4318629991L-aspartate-carbon source
4318618019L-lysine-carbon source
4318615729L-ornithine-carbon source
4318617634D-glucose+builds acid from
4318616024D-mannose+builds acid from
4318615824D-fructose+builds acid from
4318665327D-xylose+builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
4318628971ampicillinyesyes10 µg (disc)
4318628669bacitracinyesyes0.04 Unit
4318617698chloramphenicolyesyes30 µg (disc)
43186100241ciprofloxacinyesyes5 µg (disc)
4318648923erythromycinyesyes15 µg (disc)
431866104kanamycinyesyes10 µg (disc)
431867507neomycinyesyes30 µg (disc)
43186100246norfloxacinyesyes10 µg (disc)
4318628368novobiocinyesyes30 µg (disc)
4318618208penicillin gyesyes10 Unit
4318628077rifampicinyesyes5 µg (disc)
4318617076streptomycinyesyes10 µg (disc)
4318627902tetracyclineyesyes30 µg (disc)
4318628001vancomycinyesyes30 µg (disc)

metabolite production

  • @ref: 43186
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
43186catalase+1.11.1.6
43186cytochrome oxidase-1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43186salt mineYuanyonjing Salt Mine, Yunnan province, ChinaChinaCHNAsia25101
67770Salt mine in YunnanChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Condition#Saline
#Engineered#Other#Mine

Sequence information

16S sequences

  • @ref: 43186
  • description: 16S rRNA sequences
  • accession: KX376707
  • length: 1459
  • database: ena
  • NCBI tax ID: 2004704

GC content

  • @ref: 67770
  • GC-content: 61.9
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 43186

culture collection no.: CGMCC 1.15503, JCM 31271

literature

  • topic: Phylogeny
  • Pubmed-ID: 28032536
  • title: Halorubrum trueperi sp. nov., a halophilic archaeon isolated from a salt mine.
  • authors: Chen S, Xu Y, Ke LX
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001762
  • year: 2017
  • mesh: Base Composition, China, DNA, Archaeal/genetics, Glycolipids/chemistry, Halorubrum/*classification/genetics/isolation & purification, *Mining, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43186Shaoxing Chen, Yao Xu and Li-Xia KeHalorubrum trueperi sp. nov., a halophilic archaeon isolated from a salt mine10.1099/ijsem.0.001762IJSEM 67: 1564-1570 201728032536
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/