Strain identifier

BacDive ID: 140551

Type strain: Yes

Species: Bizionia sediminis

Strain Designation: P131

Strain history: <- Zongjun Du, Shandong Univ..

NCBI tax ID(s): 1737064 (species)

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General

@ref: 43295

BacDive-ID: 140551

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Bizionia sediminis P131 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from a marine sediment sample collected from the coast of Weihai, China.

NCBI tax id

  • NCBI tax id: 1737064
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Zongjun Du, Shandong Univ..

doi: 10.13145/bacdive140551.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Bizionia
  • species: Bizionia sediminis
  • full scientific name: Bizionia sediminis Zhang et al. 2017

  • synonyms

    • @ref: 20215
    • synonym: Algorimicrobium sediminis

@ref: 43295

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Bizionia

species: Bizionia sediminis

strain designation: P131

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
43295negative1-2 µm0.4-0.6 µmrod-shapedno
67771rod-shaped
67771negative

colony morphology

  • @ref: 43295
  • colony size: 2-4 mm
  • colony color: Orange
  • colony shape: circular
  • incubation period: 2 days
  • medium used: 2216E agar

pigmentation

  • @ref: 43295
  • production: no

Culture and growth conditions

culture medium

  • @ref: 43295
  • name: 2216E agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43295positiveoptimum28-30mesophilic
43295positivegrowth4-45
67771positivegrowth28-33mesophilic

culture pH

@refabilitytypepHPH range
43295positivegrowth5.5-9alkaliphile
43295positiveoptimum7-7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43295aerobe
67771aerobe

spore formation

  • @ref: 43295
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43295NaClpositivegrowth0-10 %
43295NaClpositiveoptimum2-3 %

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
432955291gelatin+hydrolysis
4329553424tween 20+hydrolysis
4329553423tween 40+hydrolysis
4329553425tween 60+hydrolysis
4329528017starch-hydrolysis
432952509agar-hydrolysis
4329553426tween 80-hydrolysis
4329585146carboxymethylcellulose-hydrolysis
4329517632nitrate-reduction
4329516024D-mannose+oxidation
4329517924D-sorbitol+oxidation
4329516899D-mannitol+oxidation
4329518333D-arabitol+oxidation
4329514314D-glucose 6-phosphate+oxidation
4329516467L-arginine+oxidation
4329517115L-serine+oxidation
4329529991L-aspartate+oxidation
4329573784glycyl-l-glutamate+oxidation
432958391D-gluconate+oxidation
4329513705acetoacetate+oxidation
4329516947citrate+oxidation
4329517164stachyose+oxidation
43295O-nitrophenyl-beta-D-galactopyranosid-assimilation
4329516136hydrogen sulfide-assimilation
4329535581indole-assimilation
4329516024D-mannose+assimilation
4329517634D-glucose-assimilation
4329517306maltose-assimilation
4329515971L-histidine-assimilation
4329516947citrate-assimilation
4329570744glycine-proline+oxidation
4329524996lactate+oxidation
4329558187alginate-hydrolysis
4329516947citrate-carbon source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4329531168acetylspiramycinyesyes30 µg (disc)
4329528971ampicillinyesyes10 µg (disc)
432953498cefotaxime sodiumyesyes30 µg (disc)
4329517698chloramphenicolyesyes30 µg (disc)
432953745clindamycinyesyes30 µg (disc)
4329548923erythromycinyesyes15 µg (disc)
4329517833gentamicinyesyes10 µg (disc)
432956104kanamycinyesyes30 µg (disc)
43295100147nalidixic acidyesyes30 µg (disc)
432957507neomycinyesyes30 µg (disc)
43295100246norfloxacinyesyes10 µg (disc)
432957731ofloxacinyesyes5 µg (disc)
4329518208penicillin gyesyes10 µg (disc)
4329528077rifampicinyesyes5 µg (disc)
4329517076streptomycinyesyes10 µg (disc)
4329553727sulfamethoxydiazineyesyes10 µg (disc)
4329527902tetracyclineyesyes30 µg (disc)
4329528864tobramycinyesyes10 µg (disc)

enzymes

@refvalueactivityec
43295cytochrome oxidase-1.9.3.1
43295catalase+1.11.1.6
43295arginine dihydrolase-3.5.3.6
43295lysine decarboxylase-4.1.1.18
43295ornithine decarboxylase-4.1.1.17
43295urease-3.5.1.5
43295tryptophan deaminase-4.1.99.1
43295esterase (C 4)-
43295lipase (C 14)-
43295cystine arylamidase-3.4.11.3
43295alpha-galactosidase-3.2.1.22
432956-phospho-beta-galactosidase-3.2.1.85
43295alpha-chymotrypsin-3.4.21.1
43295beta-glucuronidase-3.2.1.31
43295alpha-glucosidase-3.2.1.20
43295beta-glucosidase-3.2.1.21
43295alpha-mannosidase-3.2.1.24
43295N-acetyl-beta-glucosaminidase-3.2.1.52
43295beta-D-fucosidase-3.2.1.38
43295trypsin-3.4.21.4
43295alkaline phosphatase+3.1.3.1
43295esterase Lipase (C 8)+
43295leucine arylamidase+3.4.11.1
43295valine arylamidase+
43295acid phosphatase+3.1.3.2
43295naphthol-AS-BI-phosphohydrolase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43295a marine sediment sample collected from the coast of Weihai, ChinaWeihai, ChinaChinaCHNAsia36122
67771From marine sediment of the coast of WeihaiChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Coast

Sequence information

16S sequences

  • @ref: 43295
  • description: 16s rRNA
  • accession: KR528476
  • database: nuccore

GC content

@refGC-contentmethod
4329536.7high performance liquid chromatography (HPLC)
6777136.7

External links

@ref: 43295

culture collection no.: MCCC 1H00124, KCTC 42587

literature

  • topic: Phylogeny
  • Pubmed-ID: 28691658
  • title: Bizionia sediminis sp. nov., isolated from coastal sediment.
  • authors: Zhang H, Shi MJ, Xia HF, Chen GJ, Du ZJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001936
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43295Hui Zhang, Ming-Jing Shi, Hai-Feng Xia, Guan-Jun Chen, Zong-Jun DuBizionia sediminis sp. Nov., isolated from coastal sediment10.1099/ijsem.0.001936IJSEM 67: 2263-2267 201728691658
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc