Strain identifier
BacDive ID: 14054
Type strain:
Species: Shewanella putrefaciens
Strain Designation: 95
Strain history: CIP <- 1980, C. Richard, Inst. Pasteur, Paris, France: strain 12-80, Alteromonas putrefaciens <- ATCC <- B.W. Hammer: strain 95, Pseudomonas putrefaciens
NCBI tax ID(s): 1236543 (strain), 24 (species)
General
@ref: 2428
BacDive-ID: 14054
DSM-Number: 6067
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile, human pathogen
description: Shewanella putrefaciens 95 is an aerobe, mesophilic, motile human pathogen that was isolated from Butter.
NCBI tax id
NCBI tax id | Matching level |
---|---|
24 | species |
1236543 | strain |
strain history
@ref | history |
---|---|
2428 | <- ATCC <- B.W. Hammer, 95 (Pseudomonas putrefaciens) |
67770 | IAM 1509 <-- ATCC 8071 <-- B. W. Hammer 95. |
122075 | CIP <- 1980, C. Richard, Inst. Pasteur, Paris, France: strain 12-80, Alteromonas putrefaciens <- ATCC <- B.W. Hammer: strain 95, Pseudomonas putrefaciens |
doi: 10.13145/bacdive14054.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella putrefaciens
- full scientific name: Shewanella putrefaciens (Lee et al. 1981 ex Derby and Hammer 1931) MacDonell and Colwell 1986
synonyms
- @ref: 20215
- synonym: Alteromonas putrefaciens
@ref: 2428
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella putrefaciens
full scientific name: Shewanella putrefaciens (Lee et al. 1981) MacDonell and Colwell 1986
strain designation: 95
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 98.494 | ||
69480 | 99.99 | negative | ||
122075 | yes | negative | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2428 | NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605) | yes | https://mediadive.dsmz.de/medium/605 | Name: NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605) Composition: Agar 15.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Lab-Lemco beef extract 1.0 g/l Distilled water |
2428 | OXOID NUTRIENT BROTH (DSMZ Medium 948) | yes | https://mediadive.dsmz.de/medium/948 | Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water |
37718 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
122075 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2428 | positive | growth | 26 | mesophilic |
37718 | positive | growth | 25 | mesophilic |
45954 | positive | growth | 30-37 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
122075 | positive | growth | 25-37 | mesophilic |
122075 | no | growth | 5 | psychrophilic |
122075 | no | growth | 41 | thermophilic |
122075 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
45954 | aerobe |
122075 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.99 |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
122075 | nitrate | + | reduction | 17632 |
122075 | nitrite | + | reduction | 16301 |
122075 | sodium thiosulfate | + | builds gas from | 132112 |
122075 | nitrate | + | respiration | 17632 |
antibiotic resistance
- @ref: 122075
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
enzymes
@ref | value | activity | ec |
---|---|---|---|
122075 | oxidase | + | |
122075 | beta-galactosidase | - | 3.2.1.23 |
122075 | alcohol dehydrogenase | - | 1.1.1.1 |
122075 | DNase | + | |
122075 | caseinase | + | 3.4.21.50 |
122075 | catalase | - | 1.11.1.6 |
122075 | tween esterase | - | |
122075 | lecithinase | + | |
122075 | lipase | + | |
122075 | lysine decarboxylase | - | 4.1.1.18 |
122075 | ornithine decarboxylase | + | 4.1.1.17 |
122075 | protease | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122075 | - | + | + | + | - | + | + | + | + | + | + | + | - | - | - | - | - | + | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122075 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122075 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | - | - | - | - | - | - | - | - | + | - | + | - | - | + | - | + | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
45954 | Butter |
67770 | Butter |
122075 | Surface of tainted butter |
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Dairy product
taxonmaps
- @ref: 69479
- File name: preview.99_3799.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_126;97_134;98_151;99_3799&stattab=map
- Last taxonomy: Shewanella
- 16S sequence: X81623
- Sequence Identity:
- Total samples: 6
- aquatic counts: 2
- animal counts: 4
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|---|
2428 | yes | yes | 2 | Risk group (German classification) |
122075 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Shewanella putrefaciens strain ATCC 8071 16S ribosomal RNA gene, partial sequence | FJ971881 | 797 | ena | 24 |
20218 | S.putrefaciens 16S rRNA gene (ATCC 8071) | X82133 | 1436 | ena | 24 |
20218 | Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence | EU014563 | 374 | ena | 24 |
20218 | Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence | EU014564 | 477 | ena | 24 |
20218 | Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence | EU014565 | 326 | ena | 24 |
20218 | Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence | EU014566 | 794 | ena | 24 |
20218 | Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence | EU014567 | 947 | ena | 24 |
20218 | Shewanella putrifaciens 16S rRNA | D11190 | 165 | ena | 24 |
20218 | Shewanella putrifaciens 16S rRNA | D11239 | 212 | ena | 24 |
20218 | Shewanella putrifaciens 16S rRNA | D11288 | 191 | ena | 24 |
20218 | S.putrefaciens 16S rRNA gene | X81623 | 1536 | ena | 24 |
20218 | Shewanella putrefaciens gene for 16S rRNA, partial sequence, strain: NBRC 3908 | AB680167 | 1433 | ena | 24 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Shewanella putrefaciens ATCC 8071 | GCA_016406325 | complete | ncbi | 24 |
66792 | Shewanella putrefaciens JCM 20190 | 1236543.3 | wgs | patric | 1236543 |
66792 | Shewanella putrefaciens JCM 20190 = NBRC 3908 | 1236543.4 | wgs | patric | 1236543 |
66792 | Shewanella putrefaciens strain ATCC 8071 | 24.44 | complete | patric | 24 |
66792 | Shewanella putrefaciens strain JCM 20190 | 24.42 | wgs | patric | 24 |
66792 | Shewanella putrefaciens JCM 20190 | 2585427914 | draft | img | 1236543 |
66792 | Shewanella putrefaciens NBRC 3908 | 2731957646 | draft | img | 1236543 |
67770 | Shewanella putrefaciens JCM 20190 = NBRC 3908 | GCA_000615005 | contig | ncbi | 1236543 |
67770 | Shewanella putrefaciens JCM 20190 = NBRC 3908 | GCA_001591325 | contig | ncbi | 1236543 |
67770 | Shewanella putrefaciens JCM 20190 | GCA_014647555 | scaffold | ncbi | 24 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 91.044 | no |
gram-positive | no | 98.848 | no |
anaerobic | no | 94.88 | yes |
aerobic | yes | 54.392 | yes |
halophile | no | 70.38 | no |
spore-forming | no | 95.728 | no |
thermophile | no | 99.595 | yes |
glucose-util | yes | 89.617 | no |
motile | yes | 94.075 | no |
glucose-ferment | no | 65.565 | no |
External links
@ref: 2428
culture collection no.: DSM 6067, ATCC 8071, ICPB 352, NCIB 10471, CCUG 13452 D, JCM 20190, CCUG 13452, CECT 331, CIP 80.40, IAM 12079, IAM 1509, IFO 3908, JCM 9294, LMG 2268, NBRC 3908, NCIMB 10471, NCTC 12960
straininfo link
- @ref: 83223
- straininfo: 4969
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 2391295 | Classification of the spoilage flora of fish, with special reference to Shewanella putrefaciens. | Stenstrom IM, Molin G | J Appl Bacteriol | 10.1111/j.1365-2672.1990.tb05226.x | 1990 | Animals, Bacteria, Aerobic/*classification, Cluster Analysis, Fishes/*microbiology, *Food Microbiology, Pseudomonas/*classification | Biotechnology |
Phylogeny | 7441198 | Lipid composition and chemotaxonomy of Pseudomonas putrefaciens (Alteromonas putrefaciens). | Wilkinson SG, Caudwell PF | J Gen Microbiol | 10.1099/00221287-118-2-329 | 1980 | Fatty Acids/analysis, Lipids/*analysis, Lipopolysaccharides/analysis, Phosphatidylethanolamines/analysis, Phosphatidylglycerols/analysis, Phospholipids/analysis, Pseudomonas/analysis/*classification | |
Metabolism | 7830320 | [A simple method for differentiation of hydrogen sulfide-producing bacteria by the pH-dependent EDTA-sensitivity test]. | Kida N, Matsuzaki M, Matsukawa A, Suzuki S, Ushiama N, Kawahara K, Taguchi F | Nihon Saikingaku Zasshi | 10.3412/jsb.49.769 | 1994 | Bacteria/*classification/*drug effects/metabolism, Edetic Acid/*pharmacology, Hydrogen Sulfide/*metabolism, Hydrogen-Ion Concentration, Microbial Sensitivity Tests/methods | Phylogeny |
Biotechnology | 8486552 | Production and specificity of poly- and monoclonal antibodies raised against Shewanella putrefaciens. | Fonnesbech B, Frokiaer H, Gram L, Jespersen CM | J Appl Bacteriol | 10.1111/j.1365-2672.1993.tb05152.x | 1993 | Animals, Antibodies, Bacterial/analysis/*biosynthesis, Antibodies, Monoclonal/analysis/*biosynthesis, Antibody Specificity, Enzyme-Linked Immunosorbent Assay, Immunoblotting, Mice, Pseudomonas/*immunology, Rabbits, Vibrionaceae/*immunology | |
Phylogeny | 9172338 | Differentiation of Shewanella putrefaciens and Shewanella alga on the basis of whole-cell protein profiles, ribotyping, phenotypic characterization, and 16S rRNA gene sequence analysis. | Vogel BF, Jorgensen K, Christensen H, Olsen JE, Gram L | Appl Environ Microbiol | 10.1128/aem.63.6.2189-2199.1997 | 1997 | Animals, Bacterial Proteins/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, Fishes/microbiology, Fuel Oils, Genes, Bacterial, Gram-Negative Facultatively Anaerobic Rods/chemistry/*classification/genetics, Humans, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/*genetics, RNA, Ribosomal, 16S/*genetics, Species Specificity, Water Microbiology | Pathogenicity |
Biotechnology | 15163589 | New method for rapid and sensitive quantification of sulphide-producing bacteria in fish from arctic and temperate waters. | Skjerdal OT, Lorentzen G, Tryland I, Berg JD | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2003.11.016 | 2004 | Animals, Colony Count, Microbial, Color, Fishes/*microbiology, Fluorescence, Food Microbiology, Food Preservation/*methods, Hydrogen Sulfide/*analysis, Iron/chemistry/metabolism, Odorants/analysis, Predictive Value of Tests, Regression Analysis, Sensitivity and Specificity, Shewanella putrefaciens/*isolation & purification/metabolism, Temperature, Time Factors | Metabolism |
Phylogeny | 15653901 | Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant. | Xu M, Guo J, Cen Y, Zhong X, Cao W, Sun G | Int J Syst Evol Microbiol | 10.1099/ijs.0.63157-0 | 2005 | Bacterial Typing Techniques, China, Coloring Agents/*metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology, Shewanella/*classification/genetics/isolation & purification/physiology, *Textile Industry, Waste Disposal, Fluid/*methods | Genetics |
Phylogeny | 16403893 | Shewanella hafniensis sp. nov. and Shewanella morhuae sp. nov., isolated from marine fish of the Baltic Sea. | Satomi M, Vogel BF, Gram L, Venkateswaran K | Int J Syst Evol Microbiol | 10.1099/ijs.0.63931-0 | 2006 | Animals, Base Composition, DNA Gyrase/genetics, DNA, Bacterial/chemistry, Denmark, Flounder/*microbiology, Gadiformes/*microbiology, Molecular Sequence Data, Oceans and Seas, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Shewanella/chemistry/*classification/isolation & purification/physiology, Species Specificity | Genetics |
Metabolism | 21482426 | How does organic matter constrain the nature, size and availability of Fe nanoparticles for biological reduction? | Pedrot M, Le Boudec A, Davranche M, Dia A, Henin O | J Colloid Interface Sci | 10.1016/j.jcis.2011.03.067 | 2011 | Benzopyrans/chemistry/*metabolism, Colloids/chemistry/metabolism, *Humic Substances, Hydrogen-Ion Concentration, Iron/chemistry/*metabolism, Oxidation-Reduction, Particle Size, Shewanella putrefaciens/chemistry/*metabolism, Surface Properties | |
Phylogeny | 35849218 | Shewanella azerbaijanica sp. nov. a novel aquatic species with high bioremediation abilities. | Nouioui I, Tarhriz V, Kim HM, Montazersaheb S, Hejazi MA, Jeon CO, Klenk HP, Hejazi MS | Arch Microbiol | 10.1007/s00203-022-03112-4 | 2022 | Bacterial Typing Techniques, Biodegradation, Environmental, DNA, Bacterial/genetics, Fatty Acids, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Shewanella/genetics, *Sodium Chloride | Transcriptome |
Phylogeny | 35861494 | Shewanella oncorhynchi sp. nov., a novel member of the genus Shewanella, isolated from Rainbow Trout (Oncorhynchus mykiss). | Altun S, Duman M, Ay H, Saticioglu IB | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005460 | 2022 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Oncorhynchus mykiss, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater, Sequence Analysis, DNA, *Shewanella, Ubiquinone | Transcriptome |
35996024 | Antimicrobial Effect of Epigallocatechin Gallate Against Shewanella putrefaciens ATCC 8071: A Study Based on Cell Membrane and Biofilm. | Pei J, Yu H, Qiu W, Mei J, Xie J | Curr Microbiol | 10.1007/s00284-022-02978-3 | 2022 | Animals, *Anti-Infective Agents/pharmacology, Biofilms, Catechin/analogs & derivatives, Cell Membrane, *Shewanella putrefaciens | ||
Metabolism | 36512125 | Study on spoilage potential and its molecular basis of Shewanella putrefaciens in response to cold conditions by Label-free quantitative proteomic analysis. | Qian YF, Cheng Y, Xie J, Yang SP | World J Microbiol Biotechnol | 10.1007/s11274-022-03479-y | 2022 | *Shewanella putrefaciens/metabolism, Cold Temperature, Proteomics, Biogenic Amines/analysis/metabolism, Nitrogen/metabolism, Peptide Hydrolases/metabolism, *Shewanella/metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2428 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6067) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6067 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
37718 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/11135 | ||||
45954 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 13452 D) | https://www.ccug.se/strain?id=13452 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
83223 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID4969.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
122075 | Curators of the CIP | Collection of Institut Pasteur (CIP 80.40) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2080.40 |