Strain identifier
BacDive ID: 140527
Type strain:
Species: Muricauda marina
Strain Designation: H19-56
Strain history: X.-H. Zhang and Y. Wang; Coll. of Mar. Life Sci., Ocean Univ. of China, China; H19-56.
NCBI tax ID(s): 1775168 (species)
General
@ref: 43301
BacDive-ID: 140527
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming
description: Muricauda marina H19-56 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from marine snow sample obtainded fron the Yellow Sea.
NCBI tax id
- NCBI tax id: 1775168
- Matching level: species
strain history
- @ref: 67770
- history: X.-H. Zhang and Y. Wang; Coll. of Mar. Life Sci., Ocean Univ. of China, China; H19-56.
doi: 10.13145/bacdive140527.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Muricauda
- species: Muricauda marina
- full scientific name: Muricauda marina Su et al. 2017
synonyms
- @ref: 20215
- synonym: Allomuricauda marina
@ref: 43301
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Muricauda
species: Muricauda marina
strain designation: H19-56
type strain: yes
Morphology
cell morphology
- @ref: 43301
- gram stain: negative
- cell length: 1.8-6.0 µm
- cell width: 0.2-0.4 µm
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 43301
- colony size: 0.6-0.8 mm
- colony color: light yellow, transparent
- colony shape: circular
- incubation period: 3 days
- medium used: Marine agar 2216
pigmentation
@ref | production | name |
---|---|---|
43301 | no | Flexirubin-type pigment |
43301 | yes | Carotenoid pigment |
Culture and growth conditions
culture medium
- @ref: 43301
- name: Marine agar (MA)
- growth: yes
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43301 | positive | optimum | 32 | mesophilic |
43301 | positive | growth | 16-45 | |
67770 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
43301 | positive | growth | 6-9 | alkaliphile |
43301 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 43301
- oxygen tolerance: aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
43301 | NaCl | positive | growth | 1-7 %(w/v) |
43301 | NaCl | positive | optimum | 3 % |
observation
- @ref: 67770
- observation: quinones: MK-6
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43301 | 16991 | dna | + | degradation |
43301 | 28017 | starch | + | degradation |
43301 | 5291 | gelatin | + | degradation |
43301 | 53424 | tween 20 | + | degradation |
43301 | 53423 | tween 40 | + | degradation |
43301 | casein | - | hydrolysis | |
43301 | 17029 | chitin | - | hydrolysis |
43301 | 62968 | cellulose | - | hydrolysis |
43301 | 53426 | tween 80 | - | hydrolysis |
43301 | 16301 | nitrite | - | reduction |
43301 | 16199 | urea | - | hydrolysis |
43301 | 16947 | citrate | - | carbon source |
43301 | 17234 | glucose | + | builds acid from |
43301 | 43943 | methyl alpha-D-mannoside | + | builds acid from |
43301 | 3-O-methyl alpha-D-glucopyranoside | + | builds acid from | |
43301 | 506227 | N-acetylglucosamine | + | builds acid from |
43301 | 27613 | amygdalin | + | builds acid from |
43301 | 18305 | arbutin | + | builds acid from |
43301 | 4853 | esculin | + | builds acid from |
43301 | 17814 | salicin | + | builds acid from |
43301 | 17057 | cellobiose | + | builds acid from |
43301 | 17306 | maltose | + | builds acid from |
43301 | 17716 | lactose | + | builds acid from |
43301 | 27082 | trehalose | + | builds acid from |
43301 | 17992 | sucrose | + | builds acid from |
43301 | 16634 | raffinose | + | builds acid from |
43301 | 28066 | gentiobiose | + | builds acid from |
43301 | 32528 | turanose | + | builds acid from |
43301 | 62318 | D-lyxose | + | builds acid from |
43301 | 16443 | D-tagatose | + | builds acid from |
43301 | 28847 | D-fucose | + | builds acid from |
43301 | 18287 | L-fucose | + | builds acid from |
43301 | 58143 | 5-dehydro-D-gluconate | + | builds acid from |
43301 | 40585 | alpha-cyclodextrin | + | carbon source |
43301 | 17057 | cellobiose | + | carbon source |
43301 | 15824 | D-fructose | + | carbon source |
43301 | 18287 | L-fucose | + | carbon source |
43301 | 28066 | gentiobiose | + | carbon source |
43301 | 17925 | alpha-D-glucose | + | carbon source |
43301 | 12936 | D-galactose | + | carbon source |
43301 | 17716 | lactose | + | carbon source |
43301 | 6359 | lactulose | + | carbon source |
43301 | 17306 | maltose | + | carbon source |
43301 | 16024 | D-mannose | + | carbon source |
43301 | 28053 | melibiose | + | carbon source |
43301 | 320055 | methyl beta-D-glucopyranoside | + | carbon source |
43301 | 16634 | raffinose | + | carbon source |
43301 | 17992 | sucrose | + | carbon source |
43301 | 27082 | trehalose | + | carbon source |
43301 | 32528 | turanose | + | carbon source |
43301 | 51850 | methyl pyruvate | + | carbon source |
43301 | 30089 | acetate | + | carbon source |
43301 | 16947 | citrate | + | carbon source |
43301 | 16763 | 2-oxobutanoate | + | carbon source |
43301 | 16004 | (R)-lactate | + | carbon source |
43301 | 16651 | (S)-lactate | + | carbon source |
43301 | 30612 | D-glucarate | + | carbon source |
43301 | 30031 | succinate | + | carbon source |
43301 | 21217 | L-alaninamide | + | carbon source |
43301 | 15570 | D-alanine | + | carbon source |
43301 | 16977 | L-alanine | + | carbon source |
43301 | 73786 | L-alanylglycine | + | carbon source |
43301 | 17196 | L-asparagine | + | carbon source |
43301 | 29991 | L-aspartate | + | carbon source |
43301 | 29985 | L-glutamate | + | carbon source |
43301 | glycyl-L-bromosuccinic glutamic acid | + | carbon source | |
43301 | 18240 | 4-hydroxy-L-proline | + | carbon source |
43301 | 15603 | L-leucine | + | carbon source |
43301 | 15729 | L-ornithine | + | carbon source |
43301 | 17115 | L-serine | + | carbon source |
43301 | 16857 | L-threonine | + | carbon source |
43301 | 17596 | inosine | + | carbon source |
43301 | 16704 | uridine | + | carbon source |
43301 | 17748 | thymidine | + | carbon source |
43301 | 50048 | phenylethylamine | + | carbon source |
43301 | 14314 | D-glucose 6-phosphate | + | carbon source |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
43301 | 15688 | acetoin | no |
43301 | 35581 | indole | no |
43301 | 16136 | hydrogen sulfide | no |
enzymes
@ref | value | activity | ec |
---|---|---|---|
43301 | catalase | + | 1.11.1.6 |
43301 | cytochrome oxidase | + | 1.9.3.1 |
43301 | beta-glucosidase | + | 3.2.1.21 |
43301 | lysine decarboxylase | - | 4.1.1.18 |
43301 | ornithine decarboxylase | - | 4.1.1.17 |
43301 | tryptophan deaminase | - | 4.1.99.1 |
43301 | arginine dihydrolase | - | 3.5.3.6 |
43301 | acid phosphatase | + | 3.1.3.2 |
43301 | alkaline phosphatase | + | 3.1.3.1 |
43301 | esterase (C 4) | + | |
43301 | leucine arylamidase | + | 3.4.11.1 |
43301 | valine arylamidase | + | |
43301 | cystine arylamidase | + | 3.4.11.3 |
43301 | trypsin | + | 3.4.21.4 |
43301 | naphthol-AS-BI-phosphohydrolase | + | |
43301 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
43301 | alpha-chymotrypsin | - | 3.4.21.1 |
43301 | alpha-glucosidase | - | 3.2.1.20 |
43301 | lipase (C 14) | - | |
43301 | alpha-galactosidase | - | 3.2.1.22 |
43301 | beta-galactosidase | - | 3.2.1.23 |
43301 | beta-glucuronidase | - | 3.2.1.31 |
43301 | beta-glucosidase | - | 3.2.1.21 |
43301 | alpha-mannosidase | - | 3.2.1.24 |
43301 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 43301 C15:0 4.8 43301 C16:0 1.3 43301 C15:0 iso 29.8 43301 C15:1 iso G 22.9 43301 C17:1 iso ω9c 3.7 43301 C17:0 iso 3OH 9.9 43301 C16:1ω7c / iso C15:0 2-OH 7.4 43301 Unknown 11.543 1 11543 43301 Unknown 13.565 7.2 13565 - type of FA analysis: whole cell analysis
- incubation medium: Marine agar 2216
- agar/liquid: agar
- incubation temperature: 28
- software version: Sherlock 6.0
- system: MIS MIDI
- cutoff value:
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|---|
43301 | marine snow sample obtainded fron the Yellow Sea | 2015-08 | Yellow sea | China | CHN | Asia | 34 | 121 |
67770 | Surface marine snow sample collected from the Yellow Sea near China |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_21154.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15779;96_885;97_1033;98_15959;99_21154&stattab=map
- Last taxonomy: Muricauda marina subclade
- 16S sequence: KU315479
- Sequence Identity:
- Total samples: 48
- soil counts: 2
- aquatic counts: 44
- plant counts: 2
Sequence information
16S sequences
- @ref: 43301
- description: 16S rRNA gene sequence
- accession: KU315479
- database: nuccore
GC content
- @ref: 67770
- GC-content: 43.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 43301
culture collection no.: KCTC 52374, MCCC 1K03196, JCM 31456, CGMCC 1.15774
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 28741993 | Muricauda marina sp. nov., isolated from marine snow of Yellow Sea. | Su Y, Yang X, Wang Y, Liu Y, Ren Q, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001992 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Snow/*microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 29458486 | Muricauda indica sp. nov., isolated from deep sea water. | Zhang X, Liu X, Lai Q, Du Y, Sun F, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002602 | 2018 | ||
Phylogeny | 29932387 | Muricauda iocasae sp. nov., isolated from deep sea sediment of the South China Sea. | Liu SQ, Sun QL, Sun YY, Yu C, Sun L | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002870 | 2018 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 32721276 | Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea. | Kim D, Yoo Y, Khim JS, Yang D, Pathiraja D, Choi IG, Kim JJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004312 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
43301 | Ying Su, Xiaoting Yang, Yanan Wang, Yuyang Liu, Qiaomeng Ren, Xiao-Hua Zhang | Muricauda marina sp. nov., isolated from marine snow of Yellow Sea | 10.1099/ijsem.0.001992 | IJSEM 67: 2446-2451 2017 | 28741993 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |