Strain identifier

BacDive ID: 140527

Type strain: Yes

Species: Muricauda marina

Strain Designation: H19-56

Strain history: X.-H. Zhang and Y. Wang; Coll. of Mar. Life Sci., Ocean Univ. of China, China; H19-56.

NCBI tax ID(s): 1775168 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43301

BacDive-ID: 140527

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Muricauda marina H19-56 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from marine snow sample obtainded fron the Yellow Sea.

NCBI tax id

  • NCBI tax id: 1775168
  • Matching level: species

strain history

  • @ref: 67770
  • history: X.-H. Zhang and Y. Wang; Coll. of Mar. Life Sci., Ocean Univ. of China, China; H19-56.

doi: 10.13145/bacdive140527.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Muricauda
  • species: Muricauda marina
  • full scientific name: Muricauda marina Su et al. 2017
  • synonyms

    • @ref: 20215
    • synonym: Allomuricauda marina

@ref: 43301

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Muricauda

species: Muricauda marina

strain designation: H19-56

type strain: yes

Morphology

cell morphology

  • @ref: 43301
  • gram stain: negative
  • cell length: 1.8-6.0 µm
  • cell width: 0.2-0.4 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43301
  • colony size: 0.6-0.8 mm
  • colony color: light yellow, transparent
  • colony shape: circular
  • incubation period: 3 days
  • medium used: Marine agar 2216

pigmentation

@refproductionname
43301noFlexirubin-type pigment
43301yesCarotenoid pigment

Culture and growth conditions

culture medium

  • @ref: 43301
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43301positiveoptimum32mesophilic
43301positivegrowth16-45
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
43301positivegrowth6-9alkaliphile
43301positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 43301
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
43301NaClpositivegrowth1-7 %(w/v)
43301NaClpositiveoptimum3 %

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4330116991dna+degradation
4330128017starch+degradation
433015291gelatin+degradation
4330153424tween 20+degradation
4330153423tween 40+degradation
43301casein-hydrolysis
4330117029chitin-hydrolysis
4330162968cellulose-hydrolysis
4330153426tween 80-hydrolysis
4330116301nitrite-reduction
4330116199urea-hydrolysis
4330116947citrate-carbon source
4330117234glucose+builds acid from
4330143943methyl alpha-D-mannoside+builds acid from
433013-O-methyl alpha-D-glucopyranoside+builds acid from
43301506227N-acetylglucosamine+builds acid from
4330127613amygdalin+builds acid from
4330118305arbutin+builds acid from
433014853esculin+builds acid from
4330117814salicin+builds acid from
4330117057cellobiose+builds acid from
4330117306maltose+builds acid from
4330117716lactose+builds acid from
4330127082trehalose+builds acid from
4330117992sucrose+builds acid from
4330116634raffinose+builds acid from
4330128066gentiobiose+builds acid from
4330132528turanose+builds acid from
4330162318D-lyxose+builds acid from
4330116443D-tagatose+builds acid from
4330128847D-fucose+builds acid from
4330118287L-fucose+builds acid from
43301581435-dehydro-D-gluconate+builds acid from
4330140585alpha-cyclodextrin+carbon source
4330117057cellobiose+carbon source
4330115824D-fructose+carbon source
4330118287L-fucose+carbon source
4330128066gentiobiose+carbon source
4330117925alpha-D-glucose+carbon source
4330112936D-galactose+carbon source
4330117716lactose+carbon source
433016359lactulose+carbon source
4330117306maltose+carbon source
4330116024D-mannose+carbon source
4330128053melibiose+carbon source
43301320055methyl beta-D-glucopyranoside+carbon source
4330116634raffinose+carbon source
4330117992sucrose+carbon source
4330127082trehalose+carbon source
4330132528turanose+carbon source
4330151850methyl pyruvate+carbon source
4330130089acetate+carbon source
4330116947citrate+carbon source
43301167632-oxobutanoate+carbon source
4330116004(R)-lactate+carbon source
4330116651(S)-lactate+carbon source
4330130612D-glucarate+carbon source
4330130031succinate+carbon source
4330121217L-alaninamide+carbon source
4330115570D-alanine+carbon source
4330116977L-alanine+carbon source
4330173786L-alanylglycine+carbon source
4330117196L-asparagine+carbon source
4330129991L-aspartate+carbon source
4330129985L-glutamate+carbon source
43301glycyl-L-bromosuccinic glutamic acid+carbon source
43301182404-hydroxy-L-proline+carbon source
4330115603L-leucine+carbon source
4330115729L-ornithine+carbon source
4330117115L-serine+carbon source
4330116857L-threonine+carbon source
4330117596inosine+carbon source
4330116704uridine+carbon source
4330117748thymidine+carbon source
4330150048phenylethylamine+carbon source
4330114314D-glucose 6-phosphate+carbon source

metabolite production

@refChebi-IDmetaboliteproduction
4330115688acetoinno
4330135581indoleno
4330116136hydrogen sulfideno

enzymes

@refvalueactivityec
43301catalase+1.11.1.6
43301cytochrome oxidase+1.9.3.1
43301beta-glucosidase+3.2.1.21
43301lysine decarboxylase-4.1.1.18
43301ornithine decarboxylase-4.1.1.17
43301tryptophan deaminase-4.1.99.1
43301arginine dihydrolase-3.5.3.6
43301acid phosphatase+3.1.3.2
43301alkaline phosphatase+3.1.3.1
43301esterase (C 4)+
43301leucine arylamidase+3.4.11.1
43301valine arylamidase+
43301cystine arylamidase+3.4.11.3
43301trypsin+3.4.21.4
43301naphthol-AS-BI-phosphohydrolase+
43301N-acetyl-beta-glucosaminidase+3.2.1.52
43301alpha-chymotrypsin-3.4.21.1
43301alpha-glucosidase-3.2.1.20
43301lipase (C 14)-
43301alpha-galactosidase-3.2.1.22
43301beta-galactosidase-3.2.1.23
43301beta-glucuronidase-3.2.1.31
43301beta-glucosidase-3.2.1.21
43301alpha-mannosidase-3.2.1.24
43301alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    43301C15:04.8
    43301C16:01.3
    43301C15:0 iso29.8
    43301C15:1 iso G22.9
    43301C17:1 iso ω9c3.7
    43301C17:0 iso 3OH9.9
    43301C16:1ω7c / iso C15:0 2-OH7.4
    43301Unknown 11.543111543
    43301Unknown 13.5657.213565
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine agar 2216
  • agar/liquid: agar
  • incubation temperature: 28
  • software version: Sherlock 6.0
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentlatitudelongitude
43301marine snow sample obtainded fron the Yellow Sea2015-08Yellow seaChinaCHNAsia34121
67770Surface marine snow sample collected from the Yellow Sea near China

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_21154.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15779;96_885;97_1033;98_15959;99_21154&stattab=map
  • Last taxonomy: Muricauda marina subclade
  • 16S sequence: KU315479
  • Sequence Identity:
  • Total samples: 48
  • soil counts: 2
  • aquatic counts: 44
  • plant counts: 2

Sequence information

16S sequences

  • @ref: 43301
  • description: 16S rRNA gene sequence
  • accession: KU315479
  • database: nuccore

GC content

  • @ref: 67770
  • GC-content: 43.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43301

culture collection no.: KCTC 52374, MCCC 1K03196, JCM 31456, CGMCC 1.15774

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28741993Muricauda marina sp. nov., isolated from marine snow of Yellow Sea.Su Y, Yang X, Wang Y, Liu Y, Ren Q, Zhang XHInt J Syst Evol Microbiol10.1099/ijsem.0.0019922017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Snow/*microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny29458486Muricauda indica sp. nov., isolated from deep sea water.Zhang X, Liu X, Lai Q, Du Y, Sun F, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0026022018
Phylogeny29932387Muricauda iocasae sp. nov., isolated from deep sea sediment of the South China Sea.Liu SQ, Sun QL, Sun YY, Yu C, Sun LInt J Syst Evol Microbiol10.1099/ijsem.0.0028702018Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny32721276Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea.Kim D, Yoo Y, Khim JS, Yang D, Pathiraja D, Choi IG, Kim JJInt J Syst Evol Microbiol10.1099/ijsem.0.0043122020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43301Ying Su, Xiaoting Yang, Yanan Wang, Yuyang Liu, Qiaomeng Ren, Xiao-Hua ZhangMuricauda marina sp. nov., isolated from marine snow of Yellow Sea10.1099/ijsem.0.001992IJSEM 67: 2446-2451 201728741993
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/