Strain identifier

BacDive ID: 140526

Type strain: Yes

Species: Flavobacterium soyangense

Strain history: <- Jang-Cheon Cho, Inha Univ.

NCBI tax ID(s): 2023265 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 8.1 (current version)

General

@ref: 43300

BacDive-ID: 140526

keywords: 16S sequence, Bacteria, aerobe, chemoheterotroph, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Flavobacterium soyangense KCTC 52245 is an aerobe, chemoheterotroph, mesophilic bacterium that forms circular colonies and was isolated from oligotrophic freshwater lake, Lake Soyang, Republic of Korea.

NCBI tax id

  • NCBI tax id: 2023265
  • Matching level: species

strain history

@refhistory
67770J.-C. Cho; Inha Univ., South Korea; IMCC26223.
67771<- Jang-Cheon Cho, Inha Univ.

doi: 10.13145/bacdive140526.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium soyangense
  • full scientific name: Flavobacterium soyangense Nam et al. 2017

@ref: 43300

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium soyangense

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
43300negative0.9-1.7 µm0.3-0.5 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 43300
  • colony size: 1.7 mm
  • colony color: yellow
  • colony shape: circular
  • incubation period: 5 days
  • medium used: R2A

pigmentation

  • @ref: 43300
  • production: no
  • name: Flexirubin-type pigments

Culture and growth conditions

culture medium

  • @ref: 43300
  • name: Reasoner's 2A agar (R2A)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43300nogrowth26mesophilic
43300positiveoptimum15psychrophilic
43300positivegrowth4-25
67770positivegrowth15psychrophilic
67771positivegrowth15psychrophilic

culture pH

@refabilitytypepH
43300positivegrowth6-8
43300positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43300aerobe
67771aerobe

nutrition type

  • @ref: 43300
  • type: chemoheterotroph

halophily

@refsaltgrowthtested relationconcentration
43300NaClpositivegrowth0-0.5 %(w/v)
43300NaClpositiveoptimum0 %

observation

@refobservation
43300quinone MK-6
67770quinones: MK-6
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4330016136hydrogen sulfide-
4330017029chitin+hydrolysis
43300casein-hydrolysis
4330085146carboxymethylcellulose-hydrolysis
4330053424tween 20-hydrolysis
4330053426tween 80-hydrolysis
4330016991dna-hydrolysis
433004853esculin+builds acid from
4330017632nitrate-reduction
4330017234glucose-fermentation
4330040585alpha-cyclodextrin+carbon source
4330023652dextrin+carbon source
4330028087glycogen+carbon source
4330017057cellobiose+carbon source
4330028066gentiobiose+carbon source
4330017925alpha-D-glucose+carbon source
4330017268myo-inositol+carbon source
4330017716lactose+carbon source
4330017306maltose+carbon source
4330016024D-mannose+carbon source
4330028053melibiose+carbon source
43300320055methyl beta-D-glucopyranoside+carbon source
4330016634raffinose+carbon source
4330017992sucrose+carbon source
4330027082trehalose+carbon source
4330032528turanose+carbon source
4330073786L-alanylglycine+carbon source
4330029985L-glutamate+carbon source
4330073804glycyl L-aspartic acid+carbon source
4330017203L-proline+carbon source
4330029042glucose 1-phosphate+carbon source

metabolite production

@refChebi-IDmetaboliteproduction
4330016136hydrogen sulfideno
4330035581indoleno

enzymes

@refvalueactivityec
43300catalase+1.11.1.6
43300cytochrome oxidase+1.9.3.1
43300urease-3.5.1.5
43300arginine dihydrolase-3.5.3.6
43300gelatinase-
43300alkaline phosphatase+3.1.3.1
43300leucine arylamidase+3.4.11.1
43300valine arylamidase+
43300acid phosphatase+3.1.3.2
43300naphthol-AS-BI-phosphohydrolase+
43300alpha-galactosidase+3.2.1.22
43300beta-galactosidase+3.2.1.23
43300alpha-glucosidase+3.2.1.20
43300beta-glucosidase+3.2.1.21
43300esterase (C 4)-
43300esterase Lipase (C 8)-
43300lipase (C 14)-
43300cystine arylamidase-3.4.11.3
43300trypsin-3.4.21.4
43300alpha-chymotrypsin-3.4.21.1
43300beta-glucuronidase-3.2.1.31
43300N-acetyl-beta-glucosaminidase-3.2.1.52
43300alpha-mannosidase-3.2.1.24
43300alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43300C12:01.4
    43300C14:03.4
    43300C16:09.6
    43300C18:03.1
    43300C15:0 iso7.8
    43300C15:0 anteiso16.5
    43300C15:1 iso G3
    43300C16:0 iso1.5
    43300C17:0 anteiso1.2
    43300C13:1 (at 12-13)3.2
    43300C15:1ω6c1.3
    43300C17:1 anteiso ω9c1.8
    43300C17:1ω6c1.9
    43300C15:0 iso 3OH4
    43300C16:0 iso 3OH2
    43300C16:0 3OH3.8
    43300C17:0 iso 3OH2.5
    43300C14:0 3-OH / iso C16:1 I1.4
    43300C16:1ω6c / C16:1ω7c29.9
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • incubation temperature: 15
  • incubation time: 5
  • software version: Sherlock 6.1
  • system: MIS MIDI
  • instrument: Agilent 7890 gas chromatograph
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43300oligotrophic freshwater lake, Lake Soyang, Republic of KoreaLake SoyangRepublic of KoreaKORAsia
67770Oligotrophic freshwater lakeLake SoyangRepublic of KoreaKORAsia
67771From freshwater, oligotrophic freshwater lakeLake SoyangRepublic of KoreaKORAsia37.9474127.819

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)

Sequence information

16S sequences

  • @ref: 43300
  • description: 16S rRNA gene sequence
  • accession: KX061439
  • database: nuccore

GC content

@refGC-contentmethod
4330034.5Thermal denaturation, fluorometry
6777034.5thermal denaturation, midpoint method (Tm)
6777134.5

External links

@ref: 43300

culture collection no.: KCTC 52245, JCM 31384, IMCC 26223

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28742006Flavobacterium soyangense sp. nov., a psychrotolerant bacterium, isolated from an oligotrophic freshwater lake.Nam GG, Joung Y, Park M, Kim S, Jeon HT, Cho JCInt J Syst Evol Microbiol10.1099/ijsem.0.0019872017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Lakes/*microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny31745602Flavobacterium nackdongense sp. nov., a cellulose-degrading bacterium isolated from sediment.Kim H, Yu SMArch Microbiol10.1007/s00203-019-01770-52019Bacterial Typing Techniques, Base Composition, Cellulose/*metabolism, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Flavobacterium/classification/genetics/*isolation & purification/*metabolism, Geologic Sediments/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers/microbiology, Sequence Analysis, DNAMetabolism
Phylogeny34228609Flavobacterium franklandianum sp. nov. and Flavobacterium gawalongense sp. nov., isolated from glaciers on the Tibetan Plateau.Liu Q, Liu HC, Yang LL, Xin YHInt J Syst Evol Microbiol10.1099/ijsem.0.0048682021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/isolation & purification, Ice Cover/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, TibetTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43300Gi Gyun Nam, Yochan Joung, Miri Park, Suhyun Kim, Hyoung Tae Jeon, Jang-Cheon ChoFlavobacterium soyangense sp. nov., a psychrotolerant bacterium, isolated from an oligotrophic freshwater lake10.1099/ijsem.0.001987IJSEM 67: 2440-2445 201728742006
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc