Strain identifier

BacDive ID: 140520

Type strain: Yes

Species: Taibaiella soli

Strain Designation: T1-10

Strain history: S. B. Kim; Chungnam Natl. Univ., South Korea; T1-10.

NCBI tax ID(s): 1649169 (species)

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General

@ref: 43100

BacDive-ID: 140520

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, ovoid-shaped, colony-forming

description: Taibaiella soli T1-10 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from soil sample from a pine forest.

NCBI tax id

  • NCBI tax id: 1649169
  • Matching level: species

strain history

  • @ref: 67770
  • history: S. B. Kim; Chungnam Natl. Univ., South Korea; T1-10.

doi: 10.13145/bacdive140520.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Taibaiella
  • species: Taibaiella soli
  • full scientific name: Taibaiella soli Kim et al. 2016

@ref: 43100

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Chitinophagales

family: Chitinophagaceae

genus: Taibaiella

species: Taibaiella soli

strain designation: T1-10

type strain: yes

Morphology

cell morphology

  • @ref: 43100
  • gram stain: negative
  • cell length: 1.0-2.0 µm
  • cell width: 0.9-1.1 µm
  • cell shape: ovoid-shaped
  • motility: yes
  • flagellum arrangement: gliding

colony morphology

  • @ref: 43100
  • colony color: yellow
  • colony shape: circular
  • medium used: tryptic soy agar (TSA)

pigmentation

  • @ref: 43100
  • production: yes
  • name: Flexirubin-type pigments

Culture and growth conditions

culture medium

@refnamegrowth
43100tryptic soy agar (TSA)yes
43100nutritient agar (NA)yes
43100Reasoner's 2A agar (R2A)yes

culture temp

@refgrowthtypetemperaturerange
43100positiveoptimum30mesophilic
43100positivegrowth10-37
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
43100positivegrowth6-7
43100positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43100
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 43100
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43100NaClpositivegrowth0-1.0 %(w/v)
43100NaClpositiveoptimum0 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
431004853esculin+hydrolysis
43100casein-hydrolysis
4310085146carboxymethylcellulose-hydrolysis
431005291gelatin-hydrolysis
4310028017starch-hydrolysis
4310053426tween 80-hydrolysis
4310017632nitrate-reduction
4310015903beta-d-glucose-assimilation
4310030849L-arabinose-assimilation
4310016024D-mannose-assimilation
4310016899D-mannitol-assimilation
43100506227N-acetylglucosamine-assimilation
4310017306maltose-assimilation
4310032032potassium gluconate-assimilation
4310027689decanoate-assimilation
4310017128adipate-assimilation
4310025115malate-assimilation
4310053258sodium citrate-assimilation
4310018401phenylacetate-assimilation

enzymes

@refvalueactivityec
43100cytochrome oxidase+1.9.3.1
43100catalase+1.11.1.6
43100alkaline phosphatase+3.1.3.1
43100esterase Lipase (C 8)+
43100leucine arylamidase+3.4.11.1
43100acid phosphatase+3.1.3.2
43100naphthol-AS-BI-phosphohydrolase+
43100valine arylamidase+
43100trypsin+3.4.21.4
43100cystine arylamidase-3.4.11.3
43100alpha-chymotrypsin-3.4.21.1
43100alpha-galactosidase-3.2.1.22
43100beta-galactosidase-3.2.1.23
43100beta-glucuronidase-3.2.1.31
43100alpha-glucosidase-3.2.1.20
43100beta-glucosidase-3.2.1.21
43100N-acetyl-beta-glucosaminidase-3.2.1.52
43100alpha-mannosidase-3.2.1.24
43100alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43100C16:01.8
    43100C15:0 iso27
    43100C17:0 iso4.4
    43100C15:0 anteiso4.5
    43100C17:0 anteiso2.7
    43100C16:1ω5c1.5
    43100C16:1ω11c4.3
    43100C15:1 iso G29.5
    43100C15:1 anteiso A1.9
    43100C17:1 anteiso A2.9
    43100C15:0 2OH2
    43100C17:0 2OH1.1
    43100C15:0 iso 3OH3.5
    43100C17:0 iso 3OH11.7
    43100anteiso-C17:1B/iso-C17:1I1.5
  • type of FA analysis: whole cell analysis
  • incubation medium: tryptic soy agar (TSA)
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 3
  • software version: Sherlock 6.1
  • system: MIS MIDI
  • instrument: Hewlett Packard 7890
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation date
43100soil sample from a pine forestDaejeonRepublic of KoreaKORAsia36127tryptic soy agar (TSA; BD)7 days30serial dilut
67770Pine forest soil inhabited by white heron in DaejeonRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil
#Host#Plants#Tree

taxonmaps

  • @ref: 69479
  • File name: preview.99_96797.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1167;96_8914;97_10719;98_66347;99_96797&stattab=map
  • Last taxonomy: Taibaiella soli subclade
  • 16S sequence: KR078254
  • Sequence Identity:
  • Total samples: 275
  • soil counts: 148
  • aquatic counts: 18
  • animal counts: 33
  • plant counts: 76

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
43100Taibaiella soli strain T1-10 16S ribosomal RNA gene, partial sequenceKR0782541467nuccore1649169
67770Influenza A virus (A/swine/Minnesota/A01134236/2011(H1N2)) segment 2 polymerase PB1 (PB1) and PB1-F2 protein (PB1-F2) genes, complete cdsKR0742582274ena1171112

GC content

@refGC-contentmethod
4310042.5Thermal denaturation, fluorometry
6777042.5thermal denaturation, midpoint method (Tm)

External links

@ref: 43100

culture collection no.: JCM 31014, KCTC 42277

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27222401Taibaiella soli sp. nov., isolated from pine forest soil.Kim MK, Kim TS, Joung Y, Han JH, Kim SBInt J Syst Evol Microbiol10.1099/ijsem.0.0011722016Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Phosphatidylethanolamines, Phospholipids/chemistry, *Phylogeny, Pinus/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny30758282Taibaiella helva sp. nov., isolated from farmland soil in China.Chen LL, Hu T, Xing ZY, Lu JS, Yang H, Huang XInt J Syst Evol Microbiol10.1099/ijsem.0.0032812019Bacterial Typing Techniques, Bacteroidetes/*classification/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, *Farms, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43100Min-Kyeong Kim, Tae-Su Kim, Yochan Joung, Ji-Hye Han, Seung Bum KimTaibaiella soli sp. nov., isolated from pine forest soil10.1099/ijsem.0.001172IJSEM 66: 3230-3234 201627222401
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/