Strain identifier
BacDive ID: 140517
Type strain:
Species: Flavobacterium fulvum
Strain Designation: UCM-R15
NCBI tax ID(s): 1778662 (species)
version 8.1 (current version)
General
@ref: 43098
BacDive-ID: 140517
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming
description: Flavobacterium fulvum UCM-R15 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from soil samples.
NCBI tax id
- NCBI tax id: 1778662
- Matching level: species
doi: 10.13145/bacdive140517.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium fulvum
- full scientific name: Flavobacterium fulvum Nguyen and Kim 2016
@ref: 43098
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium fulvum
strain designation: UCM-R15
type strain: yes
Morphology
cell morphology
- @ref: 43098
- gram stain: negative
- cell length: 0.7-1.0 µm
- cell width: 0.15-0.2 µm
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 43098
- colony color: deep yellow
- colony shape: circular
- medium used: R2A
pigmentation
- @ref: 43098
- production: yes
- name: Flexirubin-type pigment
Culture and growth conditions
culture medium
@ref | name | growth |
---|---|---|
43098 | Reasoner's 2A agar (R2A) | yes |
43098 | nutritient agar (NA) | no |
43098 | LB (Luria-Bertani) MEDIUM | no |
43098 | MacConkey agar | no |
43098 | trypticase soy agar (TSA) | no |
culture temp
- @ref: 43098
- growth: positive
- type: growth
- temperature: 15-35
culture pH
- @ref: 43098
- ability: positive
- type: growth
- pH: 5.5-9.0
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 43098
- oxygen tolerance: aerobe
spore formation
- @ref: 43098
- spore formation: no
halophily
- @ref: 43098
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-0.5 %
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
43098 | milk | + | hydrolysis | |
43098 | starch | - | hydrolysis | 28017 |
43098 | dna | - | hydrolysis | 16991 |
43098 | urea | - | hydrolysis | 16199 |
43098 | nitrate | - | reduction | 17632 |
43098 | gelatin | + | assimilation | 5291 |
43098 | esculin ferric citrate | + | assimilation | |
43098 | adipate | - | assimilation | 17128 |
43098 | L-arabinose | - | assimilation | 30849 |
43098 | L-arginine | - | assimilation | 16467 |
43098 | decanoate | - | assimilation | 27689 |
43098 | 4-nitrophenyl beta-D-galactopyranoside | - | assimilation | 355715 |
43098 | N-acetylglucosamine | - | assimilation | 506227 |
43098 | D-glucose | - | assimilation | 17634 |
43098 | malate | - | assimilation | 25115 |
43098 | maltose | - | assimilation | 17306 |
43098 | D-mannitol | - | assimilation | 16899 |
43098 | D-mannose | - | assimilation | 16024 |
43098 | phenylacetate | - | assimilation | 18401 |
43098 | potassium gluconate | - | assimilation | 32032 |
43098 | sodium citrate | - | assimilation | 53258 |
43098 | L-tryptophan | - | assimilation | 16828 |
43098 | urea | - | assimilation | 16199 |
43098 | glucose | - | builds acid from | 17234 |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
43098 | 16136 | hydrogen sulfide | no |
43098 | 35581 | indole | no |
enzymes
@ref | value | activity | ec |
---|---|---|---|
43098 | cytochrome oxidase | + | 1.9.3.1 |
43098 | catalase | + | 1.11.1.6 |
43098 | acid phosphatase | + | 3.1.3.2 |
43098 | alkaline phosphatase | + | 3.1.3.1 |
43098 | cystine arylamidase | + | 3.4.11.3 |
43098 | leucine arylamidase | + | 3.4.11.1 |
43098 | esterase Lipase (C 8) | + | |
43098 | naphthol-AS-BI-phosphohydrolase | + | |
43098 | valine arylamidase | + | |
43098 | esterase (C 4) | + | |
43098 | alpha-chymotrypsin | - | 3.4.21.1 |
43098 | alpha-fucosidase | - | 3.2.1.51 |
43098 | alpha-galactosidase | - | 3.2.1.22 |
43098 | beta-galactosidase | - | 3.2.1.23 |
43098 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
43098 | alpha-glucosidase | - | 3.2.1.20 |
43098 | beta-glucosidase | - | 3.2.1.21 |
43098 | beta-glucuronidase | - | 3.2.1.31 |
43098 | lipase (C 14) | - | |
43098 | alpha-mannosidase | - | 3.2.1.24 |
43098 | trypsin | - | 3.4.21.4 |
fatty acid profile
fatty acids
@ref fatty acid percentage 43098 C13:0 0.2 43098 C14:0 0.5 43098 C16:0 1.1 43098 C15:0 2OH 0.8 43098 C15:0 3OH 1.4 43098 C17:0 2OH 0.3 43098 C17:0 3OH 0.5 43098 C16:0 3OH 0.6 43098 C15:1ω6c 0.9 43098 C17:1ω8c 0.4 43098 C17:1ω6c 0.3 43098 C18:1ω5c 0.2 43098 C13:0 iso 1.1 43098 C14:0 iso 0.8 43098 C15:1 iso G 10.9 43098 C15:1 anteiso A 0.4 43098 C15:0 iso 33.6 43098 C15:0 anteiso 1.5 43098 C15:0 iso 3OH 8 43098 C14:0 iso 3OH 0.3 43098 C16:1 iso H 1.1 43098 C16:0 iso 2.7 43098 C16:0 iso 3OH 0.8 43098 C17:0 iso 0.2 43098 C17:0 iso 3OH 11.2 43098 C16:1ω7c / C16:1ω6c 1.7 43098 iso-C17:1ω7c / C16:0 10-methyl 18.4 - type of FA analysis: whole cell analysis
- incubation medium: R2A
- agar/liquid: agar
- incubation temperature: 28
- incubation time: 2
- system: MIS MIDI
- instrument: Hewlett-Packard 6890 series
Isolation, sampling and environmental information
isolation
- @ref: 43098
- sample type: soil samples
- geographic location: Yuseong-gu, Daejeon
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
- latitude: 36
- longitude: 127
- enrichment culture: VL55 medium
- enrichment culture duration: 4 weeks
- enrichment culture temperature: 25
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_116628.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_1250;97_1483;98_78786;99_116628&stattab=map
- Last taxonomy: Flavobacterium fulvum subclade
- 16S sequence: KU052686
- Sequence Identity:
- Total samples: 10
- soil counts: 4
- aquatic counts: 6
Sequence information
16S sequences
- @ref: 43098
- description: Flavobacterium fulvum strain UCM-R15 16S ribosomal RNA gene, partial sequence
- accession: KU052686
- length: 1454
- database: nuccore
- NCBI tax ID: 1778662
GC content
- @ref: 43098
- GC-content: 35.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 43098
culture collection no.: KACC 18666, NBRC 111764
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 27188996 | Flavobacterium fulvum sp. nov., Flavobacterium pedocola sp. nov. and Flavobacterium humicola sp. nov., three new members of the family Flavobacteriaceae, isolated from soil. | Nguyen TM, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001154 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 28809147 | Flavobacterium flaviflagrans sp. nov., a bacterium of the family Flavobacteriaceae isolated from forest soil. | Dahal RH, Chaudhary DK, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002000 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, *Forests, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
43098 | Tuan Manh Nguyen, Jaisoo Kim | Flavobacterium fulvum sp. nov., Flavobacterium pedocola sp. nov. and Flavobacterium humicola sp. nov., three new members of the family Flavobacteriaceae, isolated from soil | 10.1099/ijsem.0.001154 | IJSEM 66: 3108-3118 2016 | 27188996 |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |